Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0483 ATGTATAGCGGCACGGGTGTGGCAGGAAGAACTCGGTCTAGACAAGGAATCATTGGAAAACAATACTTTGAGAATGATAACAAGCGTAGAAAACATGGGGCTGAGGAAATTGCATCTCAAGAAGAATGGTGCTCTAGCGATACTGTATCTGACGATGGTGAGGACAAAGATGTGATTTTGACCGAAGACATTATATCAGATAATGACAATGAGGAGGACTCAGGAAGAATTCAGCCTAGACAGGCACTTACTGAGAAGGGTGAGGAGATTGGGTCTCAAGATACTGAGAAGGGTGAGGAAATTGGACCTCAAGAAGGTCAAGCGATACTATGTCTTCTGATGGTGGTGTTGATTTGGTTTCGATCGAAAATGGGGACGATGACGTCACACGAAGAGGAGAATGAAACAACAAGAATTTGCACCCTCATCCGTCAGGAGTCTCTTCACAAGGAGCAAAGAAATCCAAAAGTAACCCTTAAACGTAGAAGAAAAAAGTTTGATGGTTTCAAGATTCTTCCGAAGCATCTTCGTGGTGAGGGAGTGGTGCCTTTTGAGAACTCAGCTTCCTCAAGTGGTGAGGAAGGAAATCCGAAAGATATGAGGAAGCGACTTGAGGTGTCACAGCCACCCGAGAAATTAGAGTCTGAGAATGAATTAGATGCAATACGGTGTGAGATGGCCGAAGCTCTCTGTGATGAGGACGGAATTCCAGAAGTGACCAAGGCATCTCTATCATCAAAATGTACTCTTAGTACTGAGGCGTCACAGCCTCTTGAGGAATTAGAGTCTGAGGAAGAATATCTATGGGATGATGAGATGGACAGGTGTCTTCAAATTTGTGAAGAAGATAGTTTTGTTCAGGTTGAAAATGGTCATTGTGATGACCCATGTCCTGAAGGTGAAGTCAATATAGCTACTCGTTGTGCACGAGGGGATCATGATCTTATAATGAACGACGAAATTGGGGAATTGTGCAGACATTGCCTACATGTGACTTGGGAAATCAAGTATATTGACCCAGAGTTTGGCAAAAATCGGTCGGGAAAATCAGGTTGTAGATACTCTCCCCGTTCGGAGGATGCTGACGACTCTTTCACTAGTGACCTTGAGCGTGAAATTTCTGGTTGTGATGATAACTCTTCCGGGTCTGTTACCTATACTTCCACTGGAACTGTGTGGGATATAATTCCAAGAGCGAAAAGGAGTATGTACGATCATCAACAGGAAGCTTTTGAATTTCTTTGGACCAACTTAGCTGGTGGAATAGTTCTTGAAGAGTTGGAAAAGCAGTTAGATTTTGCTAGTGGAAGTGGCTGCATTATATCACATCCTCCTGGCACAGGCAAAACTTTTCTGACCATTGTCTTTCTCAGGGCTTTCATGAGTAGATATCCAAATTGCAGACCCATGATCATAGCTCCAACCAACATTCTTCATACATGGGAGAAAGAGTTGAAGAAGTGGGAGAAAATAGGTGTTCCTGTCCCTTTTCACAATTTGAACAAGCTTGATCTCTCTGGAGAGGAGACTGAATCTGCCATAAGACGTCTTCGGAGGCACGGTGGTCGTCGTCGTCTTCGTGCACACAAGAAGATTGAAATCCGTGGGGCAAAGTTTTATTCCTGGAAAGAGGCTACTAGCAACTTAGGAATTAGCTACACACGGTTTGATAGGCTTGCTATAAAGGTCTCTGATGATGTAACGAAAGCCCTTTTTGAACTTCCAGGATTAGTAGTTCTTGATGAAGGTCACACCCCTCGCAATGAAAATAGTCAAATATGGAAAGCCTTGTCAAAGATTGAGACAAAGAGACGCATCATACTCTCCGGTACCCCTTTTCAAAACAATTTCAAGGAGCTTCACAATACAATCCGCTTGGCCAAGCCAAGATTTGCAGAATTGAAGCAGGTTACCAGATGGAATTTGGAATATCTGCTAAAATCTTATGACAAAGTGGAGAATGATAGGGAAAGAACTGAGGTAATTGCCAGAATCAGAGATGTGATCAAACCATTTGTGCATGTACATAAGGGTACCGTGCTACAAAAGAGTCTTCCTGGGTTGATGGAATCTGTAATTAGTTTAAATCCATCTCAGACGCAGATGTCGCTTTTCGATTACATTCAGCAGTTAAGAAGGACCCAACTTCAGGGCAAATAG 2160 0.4306 MYSGTGVAGRTRSRQGIIGKQYFENDNKRRKHGAEEIASQEEWCSSDTVSDDGEDKDVILTEDIISDNDNEEDSGRIQPRQALTEKGEEIGSQDTEKGEEIGPQEGQAILCLLMVVLIWFRSKMGTMTSHEEENETTRICTLIRQESLHKEQRNPKVTLKRRRKKFDGFKILPKHLRGEGVVPFENSASSSGEEGNPKDMRKRLEVSQPPEKLESENELDAIRCEMAEALCDEDGIPEVTKASLSSKCTLSTEASQPLEELESEEEYLWDDEMDRCLQICEEDSFVQVENGHCDDPCPEGEVNIATRCARGDHDLIMNDEIGELCRHCLHVTWEIKYIDPEFGKNRSGKSGCRYSPRSEDADDSFTSDLEREISGCDDNSSGSVTYTSTGTVWDIIPRAKRSMYDHQQEAFEFLWTNLAGGIVLEELEKQLDFASGSGCIISHPPGTGKTFLTIVFLRAFMSRYPNCRPMIIAPTNILHTWEKELKKWEKIGVPVPFHNLNKLDLSGEETESAIRRLRRHGGRRRLRAHKKIEIRGAKFYSWKEATSNLGISYTRFDRLAIKVSDDVTKALFELPGLVVLDEGHTPRNENSQIWKALSKIETKRRIILSGTPFQNNFKELHNTIRLAKPRFAELKQVTRWNLEYLLKSYDKVENDRERTEVIARIRDVIKPFVHVHKGTVLQKSLPGLMESVISLNPSQTQMSLFDYIQQLRRTQLQGK 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0483 719 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 672 IPR027417 -
Lele52g0483 719 MobiDBLite consensus disorder prediction 23 38 - -
Lele52g0483 719 MobiDBLite consensus disorder prediction 49 63 - -
Lele52g0483 719 MobiDBLite consensus disorder prediction 182 217 - -
Lele52g0483 719 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 430 630 IPR014001 -
Lele52g0483 719 Pfam SNF2-related domain 434 713 IPR000330 GO:0005524|GO:0140658
Lele52g0483 719 MobiDBLite consensus disorder prediction 344 363 - -
Lele52g0483 719 MobiDBLite consensus disorder prediction 70 101 - -
Lele52g0483 719 SMART ultradead3 399 637 IPR014001 -
Lele52g0483 719 MobiDBLite consensus disorder prediction 1 102 - -
Lele52g0483 719 Gene3D - 381 674 IPR038718 -
Lele52g0483 719 MobiDBLite consensus disorder prediction 195 217 - -
Lele52g0483 719 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 35 710 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0483 Lele-ChrLele52 2947042 2950635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0483 578 628 RAD5 or RAD16-like Gene Family AT5G22750 43.137 1.18e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele52g0483 SNF2_N 5.2e-28 CL0023