Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0475 ATGAACAACCACAACCACTCATCGTCCTCATCCACTGCTGCAGAAGACAATGAATGCACCGTGAGGGAGCAAGATAGGTTCATGCCGATCGCCAACGTCATCAGAATCATGCGCAAGATCCTCCCTCCACACGCCAAGATCTCCGACGATGCCAAGGAGACCATCCAGGAATGCGTGTCCGAGTACATCAGCTTCATCACCGGCGAGGCCAACGAGCGGTGCCAGAGGGAGCAGCGGAAGACGATCACTGCCGAGGACGTGCTTTGGGCCATGAGTAAGCTTGGCTTCGACGACTACATCGAGCCCCTGACCATTTACCTTCATCGGTACCGCGAGATGGAGGGTGATCGAGCCTCCATGCGGGGCGAGCTGCTAGGAAAGCGGACGGTGGAGCCACCGTATGGGGCTCCAGGGTTAGGTGCTTTTGTGCCGCCGTTTAACATGGGCCATCCGAATGGCTACTTTGGAGCCATGGGAGGGTACATGAGGGAGCATGCACAGAATAATAATGGAGGAGAGGGGTCTTCCTCACAAGCTGAACCAAATGGTCAATACAAGTGA 561 0.5561 MNNHNHSSSSSTAAEDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTIYLHRYREMEGDRASMRGELLGKRTVEPPYGAPGLGAFVPPFNMGHPNGYFGAMGGYMREHAQNNNGGEGSSSQAEPNGQYK 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0475 186 MobiDBLite consensus disorder prediction 165 186 - -
Lele52g0475 186 MobiDBLite consensus disorder prediction 1 17 - -
Lele52g0475 186 MobiDBLite consensus disorder prediction 168 186 - -
Lele52g0475 186 Gene3D Histone, subunit A 14 131 IPR009072 GO:0046982
Lele52g0475 186 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Lele52g0475 186 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Lele52g0475 186 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Lele52g0475 186 FunFam Nuclear transcription factor Y subunit B-6 16 131 - -
Lele52g0475 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele52g0475 186 MobiDBLite consensus disorder prediction 1 20 - -
Lele52g0475 186 SUPERFAMILY Histone-fold 24 123 IPR009072 GO:0046982
Lele52g0475 186 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele52g0475 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0475 Lele-ChrLele52 2911485 2912045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0475 5 154 CCAAT-HAP3 Transcription Factor Family AT5G47670 67.901 2.35e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele52g0475 CBFD_NFYB_HMF 4.4e-26 CL0012