Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0459 ATGGTTAGGGCTGAGAACGATGCCAAACCAGCTATGGTTTGTACTGCCAATGATTTACAAAGCTGGAAAGATTTTCCCAAGGGACTTAGGGTTCTTCTCCTTGATGGGGACACCAATTCTGCTGCCGATTTAAGATCAAAGCTTGAGGCCATGGATTATATTGTTTCTATATTTCGCCATGAGACAGAAGCCTTGTCGGCGATCTCAAGCAAACTCGAAGGCTTCCATGTTGCCATTGTGGAGGTTAGTACAAGCAATGACCAGGGATGTTTCAAATTTCTCGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACGATCATTGCCTCCGCACCATGATGAAGTGTATAGCACTTGGTGCAGTGGAGTTCCTAAGAAAACCGTTCTCTGAGGAAAAGCTCCGGAATATCTGGCAGCATGTGGTTCACAAGGCATTTAATGCTGGGGCGGCTGTCCTTCCTGAATCACTAAAACCCGTCAAAGAATCCGTGGTATCAATGTTGCAGCTCCAAACAGACAACAAGGAACAGCAAAGTAAAATCTCGATAGATATCGAGAAAGTATCGAGGTTTAGAGAAAATGACCATGAGTTGTCATCTGGGAGTGATAATAAATACCCAGCTCCTTCAACTCCACAATTAAAACAGGGGGCAAGATTACTGGATGATGGAGATTGCCATGAACAGACTCATTGCTTGCCTGGAAAAGAAAGTGGAGAACTGGATGGGGAAACTATATCTGTCGAAACTACATGTGGGAATTCCAATTCTGAGGGTGCCATGCCTCAACCAAGTAAGCCTGAAACGACCGAAATCAAGAAGGAAGAGGACTTTGCCAATGGTTCTAAGAGTGAGAGTGATGTTTCTACACATATTCATGATGGAAATTTTGTCAGCAGCAACGGTGATAGTACGCCATCTCCCATAAAAGTAGGTGTTTGCAGTGATGCATGCAAGATCACAGCTAATAAAAAGAAATCGAAGAAGATGAAGGTAGACTGGACGCCTGAACTGCACAATAAATTTATTCAGGCAGTGGAACAACTTGGTATTGATCAAGCCATACCTTCTCGAATACTGGGGATAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCCAGCCATCTTCAGAAATATAGAATGCACAAGAGACATATTTTGCCGAAGGAAGAAGATCAAAGATGGCCAAATCAAAGAGATATGATGCAAAGGAGCTATTATGTACCAAGACCAATTACGGCCTATCCTCAGTATCATTCTAATCACACCATATCTCCACCTCCTATGTATCCTATGTGGGGACAACCGGCAAGTCAACCGGCCGGCTTACAGATTTGGGGCCCACCTAACTATCACGTATGGCAGCCTTTCCCAGGGATGCGTGCAGAAGCATGGGGTTGCCCCGTGTTGCCACCTTCTCAAAATCCTTGTTTTCCCCACACTCAACATATGCCTGGATTGCACAGTGCTAATAACGTTGAGTATAACCCCAGCATGCCTCCGAGTTTGTTGGAGCATCACCCGGCAGATGAAGTTGTTGACAAGGTTGTGAAGGAGGCAATAAACAAGCCATGGCTGCCCTTGCCCTTAGGTCTGAAACCTCCTTCCACAGATACTGTATTGGCTGAACTCTCTAGGCAAGGTTTATCCACCATCCCTCACGGTTCTAAATCCACATAG 1686 0.4502 MVRAENDAKPAMVCTANDLQSWKDFPKGLRVLLLDGDTNSAADLRSKLEAMDYIVSIFRHETEALSAISSKLEGFHVAIVEVSTSNDQGCFKFLENAKDLPTIMTSNDHCLRTMMKCIALGAVEFLRKPFSEEKLRNIWQHVVHKAFNAGAAVLPESLKPVKESVVSMLQLQTDNKEQQSKISIDIEKVSRFRENDHELSSGSDNKYPAPSTPQLKQGARLLDDGDCHEQTHCLPGKESGELDGETISVETTCGNSNSEGAMPQPSKPETTEIKKEEDFANGSKSESDVSTHIHDGNFVSSNGDSTPSPIKVGVCSDACKITANKKKSKKMKVDWTPELHNKFIQAVEQLGIDQAIPSRILGIMKVEGLTRHNVASHLQKYRMHKRHILPKEEDQRWPNQRDMMQRSYYVPRPITAYPQYHSNHTISPPPMYPMWGQPASQPAGLQIWGPPNYHVWQPFPGMRAEAWGCPVLPPSQNPCFPHTQHMPGLHSANNVEYNPSMPPSLLEHHPADEVVDKVVKEAINKPWLPLPLGLKPPSTDTVLAELSRQGLSTIPHGSKST 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0459 561 Gene3D - 326 388 - -
Lele52g0459 561 MobiDBLite consensus disorder prediction 251 271 - -
Lele52g0459 561 PANTHER TRANSCRIPTION ACTIVATOR GLK1 12 556 IPR044825 GO:0003700|GO:0045893
Lele52g0459 561 SUPERFAMILY Homeodomain-like 329 387 IPR009057 -
Lele52g0459 561 ProSiteProfiles Response regulatory domain profile. 30 143 IPR001789 GO:0000160
Lele52g0459 561 Pfam Myb-like DNA-binding domain 333 382 IPR001005 -
Lele52g0459 561 FunFam Two-component response regulator 326 389 - -
Lele52g0459 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 327 386 IPR017930 -
Lele52g0459 561 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 330 385 IPR006447 GO:0003677
Lele52g0459 561 FunFam Two-component response regulator-like APRR2 28 154 - -
Lele52g0459 561 Gene3D - 29 150 - -
Lele52g0459 561 MobiDBLite consensus disorder prediction 251 265 - -
Lele52g0459 561 SUPERFAMILY CheY-like 27 145 IPR011006 -
Lele52g0459 561 MobiDBLite consensus disorder prediction 195 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0459 Lele-ChrLele52 2738437 2744131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0459 12 558 Response Regulator Gene Family AT4G18020 47.378 1.59e-137 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele52g0459 Myb_DNA-binding 3.7e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0432 49 2531245 2536337 Lele52g0459 52 2738437 2744131 hybridization
Lele50g0462 50 2665104 2670780 Lele52g0459 52 2738437 2744131 hybridization