Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0445 ATGGGAGGTGCGTCACTGCCACCGGGTTTTCGATTCCACCCGACTGATGAAGAACTGGTGGGATATTACCTGAAAAGAAAAGTGGAGGGGTTGGAAATTGAGCTTGAAGTTATCCCCGTCATTGATCTTTACAAATTTGATCCCTGGGAGTTACCTGAGAAATCATTCCTTCCAAAGAGAGATATGGAATGGTTTTTCTTCTGTCCCAGGAATCCAAAGTATCCGAATGGATCAAGAACAAACAGAGCAACCAAAGCTGGATACTGGAAAGCCACTGGAAAAGACAGAAAGGTCGTGTGCCAGTCATCTCCTTCCTCTGTCACCGGTTACCGCAAGACTCTGGTTTTCTATTGTGGAAGAGCTCCTTTAGGAGATCGAACCAACTGGGTCATGCACGAGTATCGCCTTTGTGATGATCTTGCCACAGGATCACCAAGTTTTCAGGGTACTTATGCTCTGTGCCGAGTGATTAAGAAGAATGAGAAACCAAATGATTTGAAGGGAGAACACAATGGTAAAAAGGCTGGAAGCAGTTCTGTTAATGGGAATGAAACTTCAATGACAATCTCAAATGAACCTTTCAACATTTCTGGTGATGTTTCGTCACAAACAAGTCATCTGTACAATGAGAGTGGTCATTCAAGCCCTATTACTTCTCCCTCCAATGCGGTTCAGATGGCAGAGTTCGAGCAAGCTTCCATGGAGACCAATCCTTCAGATATCTGGATCTCTCCAGATTTTATTCTTGATTCTTCAAAGGACTATCCTGAAGTACAAAATGCAGTGTCTGAATACTTTCCACAGTATGACTTATCAAGCTCAATGACCCCATGGCAACCATTGGAACACCCAGAAATCTCACCCTCTTCATCGCACTCAAATTTGAATGGGGAAGTTGAATTTTCTGGTGATCTTAGTATGCCAACCTACATGGCACAGGCAAACTTCATGAACTTCTATGGAAATGACCCTATGCCTTATGGAGGTTTTGGTCAGATCAATTCAATGATGTATCCGAGACATTTCTGA 1029 0.4325 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDLYKFDPWELPEKSFLPKRDMEWFFFCPRNPKYPNGSRTNRATKAGYWKATGKDRKVVCQSSPSSVTGYRKTLVFYCGRAPLGDRTNWVMHEYRLCDDLATGSPSFQGTYALCRVIKKNEKPNDLKGEHNGKKAGSSSVNGNETSMTISNEPFNISGDVSSQTSHLYNESGHSSPITSPSNAVQMAEFEQASMETNPSDIWISPDFILDSSKDYPEVQNAVSEYFPQYDLSSSMTPWQPLEHPEISPSSSHSNLNGEVEFSGDLSMPTYMAQANFMNFYGNDPMPYGGFGQINSMMYPRHF 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0445 342 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Lele52g0445 342 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
Lele52g0445 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 221 - -
Lele52g0445 342 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
Lele52g0445 342 FunFam Nac domain-containing protein 86 15 162 - -
Lele52g0445 342 MobiDBLite consensus disorder prediction 174 220 - -
Lele52g0445 342 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Lele52g0445 342 MobiDBLite consensus disorder prediction 162 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0445 Lele-ChrLele52 2633115 2634639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0445 1 309 NAC Transcription Factor Family AT4G17980 55.272 2.94e-110 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele52g0445 NAM 1.3e-37 No_clan