Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0443 ATGCCGTCTCAACATTTCGTTGCTCTGTTCTCTCGCGGCAAACTCGGAGCACACCTAGACTCAGGCGCCGATCTTCATAGAGCTCTATGGGTTGCACTGGAAAGGAAAAACACACCCGAGCAAATCGAAAATCTCAATCGGTCAAATCGAAAATCTCAATCGGTCAAGCCAGGTAACCGCTGTCTTCACAGATTTTCAATTTCCAAATCTATCATGGAATCAGGCGTCAGGCCGCTGAAATACCATCTGGGTCTCGACGATTCGACTCAAAGCCCGAATCCTAATTCACACCCTAACATCAAAACTACCCCTAATGGCGAGGAATGTGGCTGGGGTTACTGCACAGAGGAATACTTGGAAGAAATTATAATGAAAAACTTGGAGTATTTATACAATGAAGCTATATCAAAGCTTGTTACATTGGGGTATGACGAGGACACTGCATTAAAAGCAGTATTGCGAAACGGGCACTGTTATCATGGAGGGACGGATTTGCTGACAAATATATTGCAAAACTCATTGGCTTATTTAAATAGTAATAGTGGTGGTGATAATGCATGTAAATGCAATTTGGATGGGTCAGAGCCTGTCTTCTCAGACTTGAGGGAGTTGGAGGAGTACTCTCTAGCGGTTATGGTCTGTCTCTTGCAGCATTTAAGGCCGCATTTGAGTAAAGGTGATGCCATGTGGTGTTTACTTATGAGTGATCTTCAAGTAGGAAAGGCTAACAAAATGGAAATCCCCGTGCTTCCTGAGCCAGGCGATGGTAATCCTGCTTCTTCTACAGTTGAAACTGTTAATTCAGTAGGTGTGATCACCCCTTCTCTTTGTAGGCTTCAAGAGAGTTGGGCATTTGCAAATAACGGAGACTCAGATTTCCCTGCCAATGGATTATTTTCTTGCGTTGCAAACATGACTTTACAACGAGATATTGAATGCCCCAAGCATTTTAATCTCTCTCCTTCTATGAAGTCATTGTTGAAACGAAATGTGGCAGTGTTTGCTGCTGGTTTAAGGGAAAACTCAAAACAATTGCAGACAAAATCAAAAGCACGTCCTGGCAGTAGTTCTTCATCTAGTTTGGATTCTCCTCCTATACTGGAGACTAAGCCTCCAGTTGAGAAGTCAGGGGGGGATTCTCAGAATCAAAATAACCAAGATGCTGTGAATTCAGTTCTTAGTAGATTGAGTGATCTAAATTTTGATGAGAATTTAGAGTCTCTGGCAGAAGATCAGAAGGAAGAGTTGACTTCCACTATACTCCATCAGATTAATGATCTTGAGAAACAGGTGCAGGAGCGAAAAGATTGGGCACATCTGAAGGCAATGCAAGCTGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTGAAAATGCTAAGGATGGAAAGAGAAGAGTCTCAGAGATTGAATGAAGGGAAACAGGTCCTTGAGGACACAACGATGAAAAGACTTTCAGAAATGGAGATTGCACTGAGAAAGGCTAGCAGTCAAGTGGACCGTGCCAATGCAGCAGTGAGGAAACTTGAAACTGAAAATGCAGAGATCAAAGCAGAGATGGAGGCTTCTAAATTAAGTGCTTCAGAGTCAGTCTCAGCTTGTTTGCAAGTTGCAAAAAGAGAGAAAAAGTGCTTGAAGAGGCTTCTAGCTTGGGAAAAACAGAAAGCTAAGATACAGGAGGAGATTTCAGATGAGAAAGATAAGATACTGGAGATGCAAAAAATGTTGGGTCGGATTAAACAATGTCATAGAGAAGCTGAGATCAAGTGGAGGGAGGAGTTGAGGGCTAAAGAGGAAGCGTCAACACTGTTTAAGGAGGAAAAGCGGTTGAAGGAAGAAGTAGAGGCTAATAATAAGAGGAAGCTTGAGGCTTTGCGGTTAAAGGTAGATCTAGATTTCCAGCGCCACAAGGATGATTTCCTCAGACTTGAACAGGAACTCTCGCGTCTTAAAGCATCTGATAATCACCAATCAAATAGTTCACCTGCGGCTGAGTCTGAGGATGCAAAGCCCCAAAGAGAGACAATTGCTAATCTGCTTCAAGAATTAGATGAATTGGAGGAAATTTCCAAGAAAGAAGACAACTTTGATAGGGAATGCATTATGTGTAGGAAAGATGAAGTGTCTGTTGTATTCTTGCCGTGTGCCCATCAAGTGATGTGTGGTAGGTGCAGTGATGAGTATGGGATAAGGTGCAGTGCTGTTTGTCCTTGCTGCTCGGTTTCAATCGAACAGATGATCCGTGTATTTGGGCCAACTGCTTAG 2262 0.4293 MPSQHFVALFSRGKLGAHLDSGADLHRALWVALERKNTPEQIENLNRSNRKSQSVKPGNRCLHRFSISKSIMESGVRPLKYHLGLDDSTQSPNPNSHPNIKTTPNGEECGWGYCTEEYLEEIIMKNLEYLYNEAISKLVTLGYDEDTALKAVLRNGHCYHGGTDLLTNILQNSLAYLNSNSGGDNACKCNLDGSEPVFSDLRELEEYSLAVMVCLLQHLRPHLSKGDAMWCLLMSDLQVGKANKMEIPVLPEPGDGNPASSTVETVNSVGVITPSLCRLQESWAFANNGDSDFPANGLFSCVANMTLQRDIECPKHFNLSPSMKSLLKRNVAVFAAGLRENSKQLQTKSKARPGSSSSSSLDSPPILETKPPVEKSGGDSQNQNNQDAVNSVLSRLSDLNFDENLESLAEDQKEELTSTILHQINDLEKQVQERKDWAHLKAMQAARKLSSDLTELKMLRMEREESQRLNEGKQVLEDTTMKRLSEMEIALRKASSQVDRANAAVRKLETENAEIKAEMEASKLSASESVSACLQVAKREKKCLKRLLAWEKQKAKIQEEISDEKDKILEMQKMLGRIKQCHREAEIKWREELRAKEEASTLFKEEKRLKEEVEANNKRKLEALRLKVDLDFQRHKDDFLRLEQELSRLKASDNHQSNSSPAAESEDAKPQRETIANLLQELDELEEISKKEDNFDRECIMCRKDEVSVVFLPCAHQVMCGRCSDEYGIRCSAVCPCCSVSIEQMIRVFGPTA 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0443 753 MobiDBLite consensus disorder prediction 343 365 - -
Lele52g0443 753 Pfam Zinc finger, C3HC4 type (RING finger) 696 744 - -
Lele52g0443 753 Coils Coil 596 623 - -
Lele52g0443 753 ProSiteProfiles Zinc finger RING-type profile. 699 739 IPR001841 -
Lele52g0443 753 Coils Coil 547 574 - -
Lele52g0443 753 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 673 750 IPR013083 -
Lele52g0443 753 MobiDBLite consensus disorder prediction 86 103 - -
Lele52g0443 753 Coils Coil 632 652 - -
Lele52g0443 753 MobiDBLite consensus disorder prediction 82 103 - -
Lele52g0443 753 PANTHER OS05G0141500 PROTEIN 47 748 IPR046934 -
Lele52g0443 753 Coils Coil 668 688 - -
Lele52g0443 753 Pfam Family of unknown function (DUF6592) 126 243 IPR046527 -
Lele52g0443 753 SUPERFAMILY RING/U-box 681 745 - -
Lele52g0443 753 MobiDBLite consensus disorder prediction 650 671 - -
Lele52g0443 753 Coils Coil 484 525 - -
Lele52g0443 753 MobiDBLite consensus disorder prediction 651 665 - -
Lele52g0443 753 MobiDBLite consensus disorder prediction 343 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0443 Lele-ChrLele52 2622005 2625353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0443 642 749 C3H Transcription Factor Family AT1G73950 28.704 6.54e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0443 52 2622005 2625353 Lele55g1231 55 18878555 18880553 CCT
Lele53g0264 53 2180479 2184092 Lele52g0443 52 2622005 2625353 CCT
Lele54g0267 54 2251463 2254345 Lele52g0443 52 2622005 2625353 CCT
Lele55g1223 55 18820784 18824421 Lele52g0443 52 2622005 2625353 CCT
Lele56g1170 56 15172523 15185089 Lele52g0443 52 2622005 2625353 CCT
Lele49g0416 49 2415567 2418667 Lele52g0443 52 2622005 2625353 hybridization
Lele50g0445 50 2545717 2548717 Lele52g0443 52 2622005 2625353 hybridization