Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0442 ATGCCAGTTCCACTTGCCCCTTATCCGACGCCCCCAGCTCCATATACTCCTCCAGCAAATGGTATATTGCTTTTTCCAAGGACGGTTTTCTCGTTAATGTTGGCCATGTCTCAGTTGGAGGCACTGAAACGGCCCAGTTGGTTTGTGGAAGCTGCCACACTTTGCTCATGTACATTCGTGGAGCCACAAGTGTTCAATGCTCTTGTTGTCACACTGTCAATCTTGCTTTGGAAGGTGGCCCATGTCAACTGTAGCAACTGCAGGATGCTACTCATGTATCAATATGGAGCAAGATCCGTTAAATGCGCTGTTTGCAATTTTGTGACATCAGTTGGGGTCTCAGGAAGCACGACTGAGCAGAAGTTTAGAGCTCCGAACACATCACTAACTCCTTTACCTTTCAGATACTTTGCTACTTTAGGATCAGCAGGGCAAAAGGGCGACCTGGCACGTGTTCTGTCTCCTAACAGAAGAAACCTTTCTGGTAGTTTAACCAAGGGTCAAAACACGTCGTTTTCAGCTTTCAGACACGACCTGGCACTTGTTCTGCCTCCCAATGGAAGCATTTCAAATCGAAAATTACTCCTTTTGGAGTATAAGGCGTTCATTATTCTACAGACACTACTACTTGGCTGTCCTTGTCTCTTTACTCCTGAAGAAAGTAATATCACAATAATAAGTGGCTCTACAAGCTGCTAA 699 0.4535 MPVPLAPYPTPPAPYTPPANGILLFPRTVFSLMLAMSQLEALKRPSWFVEAATLCSCTFVEPQVFNALVVTLSILLWKVAHVNCSNCRMLLMYQYGARSVKCAVCNFVTSVGVSGSTTEQKFRAPNTSLTPLPFRYFATLGSAGQKGDLARVLSPNRRNLSGSLTKGQNTSFSAFRHDLALVLPPNGSISNRKLLLLEYKAFIILQTLLLGCPCLFTPEESNITIISGSTSC 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0442 232 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 111 IPR005735 -
Lele52g0442 232 Pfam LSD1 zinc finger 84 108 IPR005735 -
Lele52g0442 232 PANTHER PROTEIN LSD1 50 121 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0442 Lele-ChrLele52 2611438 2613855 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lele52g0442 zf-LSD1 3.4e-12 No_clan