Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0439 ATGGATTCTCACGAGCCACCCCAGCATTCGCCACCGCCACACTCATCAGCGCCACCAAACATTATGATACCTCCTGGTTCTTTTTCCTCCACCATGCCCAACCCAATCCATTATTCCTTGGTCAACCCCAATTCCTCGTCCATGCTGATGGCCCCGGCCACCGCCCAATTCCCCTTCCCCACATTTGTATCACAATCCCGTTCTCCCCCTCCTCCTCCTCCATCAAAGCCTTCCGAACCTTTAAGAAACACTTCTCCTTACGAAGACTCCTCCTCTGTGTTGAGGCCCTGCGGGTTGAGTATTGGTTCTCCGAAGAAGAAGAGAGGCCGGCCCAGGAAGTATTCGCCGGATGGTGGCATTGCTCTGGGTTTGTCTCCTACGCCTTTGTCTTCTTCTGCCCCCGCTGATTTGAGTGGCACGTCCGGGGAACCACCAGCTAAAAAGAGCAGGGGAAGGCCGCCGGGATCTGGAAAGAAGCAACTGGATTCTCTTGGAGTTGGTGGGACATGCTTTATCCCACATGTAATCTTGGTGAAAACTGGGGAGGACATTACAGCAAAGCTTATGTCTTTTTGTGAAGAAGGGTCACGCACAGTCTCTATTCTTTCTGCTAATGGTGCCGTCTGTAATGCCACCCTTCGACAGCCAGCTATGTCTGGCGGTACAGTTTACTACGAGGGTCGATATGAGATTATATCTTTATCGGGGTCTTTCAATCCATCTGAAGACGGTAGTTGTAGAACAGGTGGGTTGAGTGCCACTCTTGCGGGGACTGATGGAAAAATTGTGGGTGGTAGCGTTTCTGGAATGCTAGTTGCAGCATCACCAATACAGGTCATTGTGGGTAGCTTCATTGTGGACTGGAAGAAAAAGTCGAGCTCAAAGGAGAAATCTGGGCCCTCCTCAGCAGCCACGCCCCCGGGAACTCAAGTGTTGAATTTCGGTGCATCGCCTGTGACTCCAACCAATGCTACCTCTCCAGGGGGTTCAGGGGATTCTTCTGATGACGATGATGGTGGGTCTGGGTCAGGGTCTGGGACTGGGGCTGCACTCCACAGTAGTGTTAGCCAGCTCATTCCTAATATGCCATGGCATCATCCACTATGGCCTCCGCAGCAGCGATGA 1125 0.5227 MDSHEPPQHSPPPHSSAPPNIMIPPGSFSSTMPNPIHYSLVNPNSSSMLMAPATAQFPFPTFVSQSRSPPPPPPSKPSEPLRNTSPYEDSSSVLRPCGLSIGSPKKKRGRPRKYSPDGGIALGLSPTPLSSSAPADLSGTSGEPPAKKSRGRPPGSGKKQLDSLGVGGTCFIPHVILVKTGEDITAKLMSFCEEGSRTVSILSANGAVCNATLRQPAMSGGTVYYEGRYEIISLSGSFNPSEDGSCRTGGLSATLAGTDGKIVGGSVSGMLVAASPIQVIVGSFIVDWKKKSSSKEKSGPSSAATPPGTQVLNFGASPVTPTNATSPGGSGDSSDDDDGGSGSGSGTGAALHSSVSQLIPNMPWHHPLWPPQQR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0439 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 68 327 IPR039605 GO:0003680
Lele52g0439 374 Gene3D - 173 299 - -
Lele52g0439 374 SUPERFAMILY AF0104/ALDC/Ptd012-like 172 285 - -
Lele52g0439 374 CDD DUF296 173 284 IPR005175 -
Lele52g0439 374 MobiDBLite consensus disorder prediction 64 80 - -
Lele52g0439 374 Pfam Plants and Prokaryotes Conserved (PCC) domain 173 284 IPR005175 -
Lele52g0439 374 ProSiteProfiles PPC domain profile profile. 168 306 IPR005175 -
Lele52g0439 374 MobiDBLite consensus disorder prediction 22 36 - -
Lele52g0439 374 SMART AT_hook_2 105 117 IPR017956 GO:0003677
Lele52g0439 374 SMART AT_hook_2 147 159 IPR017956 GO:0003677
Lele52g0439 374 MobiDBLite consensus disorder prediction 60 163 - -
Lele52g0439 374 MobiDBLite consensus disorder prediction 297 360 - -
Lele52g0439 374 MobiDBLite consensus disorder prediction 1 36 - -
Lele52g0439 374 MobiDBLite consensus disorder prediction 292 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0439 Lele-ChrLele52 2592630 2596782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0439 105 315 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 52.697 1.29e-62 205