Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0435 ATGTCTGTAACACAAACCATGGCTCCTCCAGAGATCGTTGCCCTTGCTTCGTCGTCGTCGTCCATGACCCAAGACCCTCCGAATCACCCAACAAACCCTAACTCCTTGATGTCGTGGAACCCTGAAGATGACGACTCATGGGAGGTCAGAGCTTTTGCGGAAGATACACGAAACGTCATGGGCACCACTTGGCCTCCCAGGTCCTACACCTGCACTTTCTGCAGAAGGGAGTTCCGTTCTGCCCAAGCTCTCGGCGGTCACATGAACGTCCACCGCCGCGACCGGGCTCGCCTCCACCAACTCCACCCAAACTCTAATTCCTTTATACTCCCTCCACAAGACCTTGTTCCTAGTCATGGATTGTGCCTTCTCTATCGTTTACCACCAGCCCCTAATAATCCCACTTTTGCCTTCGCCAACAGTTCTGGTCCTTCTCTCGCTGATCCGAATGCATGTGGAGAATCACCTTCCACGATTCTCTCCGTCTCGCCTTATCCGGCAAACGAGTTCGATTTTAATTCGGTGCTACGATCTGGCTGTAATATTTCGTATTACTCTAATAACTCCAACAAAGTGGAACTGCCCACCACCAACTCCTCCTATGATGGCCACGAAGAGCTTGATCTTGAGCTCCGGCTAGGCCACAGACCAACGCCGACCTGA 663 0.5234 MSVTQTMAPPEIVALASSSSSMTQDPPNHPTNPNSLMSWNPEDDDSWEVRAFAEDTRNVMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQLHPNSNSFILPPQDLVPSHGLCLLYRLPPAPNNPTFAFANSSGPSLADPNACGESPSTILSVSPYPANEFDFNSVLRSGCNISYYSNNSNKVELPTTNSSYDGHEELDLELRLGHRPTPT 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0435 220 PANTHER OS07G0101800 PROTEIN 41 217 - -
Lele52g0435 220 SMART c2h2final6 69 91 IPR013087 -
Lele52g0435 220 Gene3D Classic Zinc Finger 59 108 - -
Lele52g0435 220 Pfam C2H2-type zinc finger 69 93 - -
Lele52g0435 220 SUPERFAMILY beta-beta-alpha zinc fingers 66 96 IPR036236 -
Lele52g0435 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Lele52g0435 220 MobiDBLite consensus disorder prediction 17 38 - -
Lele52g0435 220 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0435 Lele-ChrLele52 2568604 2569266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0435 39 217 C2H2 Transcription Factor Family AT4G17810 42.408 9.20e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele52g0435 zf-C2H2_6 4.4e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0435 52 2568604 2569266 Lele52g0435 52 2568604 2569266 ECH
Lele49g0408 49 2364700 2365371 Lele52g0435 52 2568604 2569266 hybridization
Lele50g0438 50 2496917 2497591 Lele52g0435 52 2568604 2569266 hybridization