Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0429 ATGAGGGGCCAGAGCATGAAGCGGATGCTTGACCAGCGTACCATATGCATCCTCGTACCTGTTCGGTTCTGCGTATCCCAATTCGAAGGAAAATTCAAGGAGATTAAAATGGAGATTTCATCCAAGTACTTCGCTGAGCTAGATCCGAGCATGTTCGAGCACCAGTACCCAGCGGATTGTATGACGTACGAGGTTGATGACTTTCGGGATTTGTCGGGATACGGAGACAGTTACTCATGTTTCAACTCCAAAAGAAGCCCCGATGACTGGTTCACAGTGAAGAGCCCAGAATCGGTTGCGGAACAAAGACCAACCAAGCAACCCAAGAGCACCAACAACACTAGCTGGACCTCTTGCACCACAACAACAACGGCTGACCCCATCATCCCTTCCAATCATTCTGCTTCTAATTCCACCTCCCAGATCATTTCTTTCGAGAACTCTAATTCTTCCCCAGACGTCGCTTCTCACCAATTTTGCAGCTTGGATTCTAGCACTGTTTTCAAGCCTAAAACCGAGACCATTTTCTCTTCTGACAACTTGGATTTCAGTGCTCCATTCTCCATTTCTCAACCCACCTATGACCACAAGCCTGATTCCTTTTTGCTCCCACATGAGAATAAAACTGCCACCGTTACCAGAAATCCCATTCAAGCTCAAGATCACGTCATGGCCGAAAGAAAACGAAGGGAGAAGCTCACTCAGAGGTTTATTGCTCTTTCCGCCATTCTTCCTGCCCTCAAAAAGATGGACAAGGCTTCAGTGCTAGGAGATGCTATCAACTATGTGAAACAACTGCAGGAGCGCGTGAAAACTCTGGAGGATCAGGTAAACAAGAAAGCAGTGGAAACCGCGGTGTTTGTGAACAGGTCTGTTCTCTATGCCGACCATGATGGCTCCTCCTCCGATGAAAATTCCAACAGCGGCTCTGTCCAGCCGCTGCCCGAAATCGAAGCAAGAGTCTCGGGCAAGGAGGTACTCATCAGAATCCACTGCGAGAAACAAAATGGATATTGTGCCACCATACTCTCCCAGTTACAACATCTCCATCTCACTGTCCAGAGTAGCAGCTTCTTGCCCTTTGGGGATACCACTCTTGATATTACTATTGTTGCTCAGATGAACAAGGAAGAGTGCATGACAGCAAAAGATATAGTAAGAAGCCTGAGGCATGGTCTGAGGCAATTAAATTGA 1194 0.4732 MRGQSMKRMLDQRTICILVPVRFCVSQFEGKFKEIKMEISSKYFAELDPSMFEHQYPADCMTYEVDDFRDLSGYGDSYSCFNSKRSPDDWFTVKSPESVAEQRPTKQPKSTNNTSWTSCTTTTTADPIIPSNHSASNSTSQIISFENSNSSPDVASHQFCSLDSSTVFKPKTETIFSSDNLDFSAPFSISQPTYDHKPDSFLLPHENKTATVTRNPIQAQDHVMAERKRREKLTQRFIALSAILPALKKMDKASVLGDAINYVKQLQERVKTLEDQVNKKAVETAVFVNRSVLYADHDGSSSDENSNSGSVQPLPEIEARVSGKEVLIRIHCEKQNGYCATILSQLQHLHLTVQSSSFLPFGDTTLDITIVAQMNKEECMTAKDIVRSLRHGLRQLN 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0429 397 SMART finulus 223 272 IPR011598 GO:0046983
Lele52g0429 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983
Lele52g0429 397 MobiDBLite consensus disorder prediction 98 137 - -
Lele52g0429 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 284 IPR036638 GO:0046983
Lele52g0429 397 Coils Coil 256 283 - -
Lele52g0429 397 MobiDBLite consensus disorder prediction 95 137 - -
Lele52g0429 397 Gene3D - 208 281 IPR036638 GO:0046983
Lele52g0429 397 CDD bHLH_AtNAI1_like 219 291 - -
Lele52g0429 397 Pfam Helix-loop-helix DNA-binding domain 220 267 IPR011598 GO:0046983
Lele52g0429 397 PANTHER BHLH TRANSCRIPTION FACTOR 95 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0429 Lele-ChrLele52 2524146 2527913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0429 120 393 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.577 2.37e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele52g0429 HLH 2.9e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0429 52 2524146 2527913 Lele53g0243 53 2015061 2016371 CCT
Lele52g0429 52 2524146 2527913 Lele54g0249 54 2091292 2092448 CCT
Lele52g0429 52 2524146 2527913 Lele55g1241 55 18979808 18980969 CCT
Lele52g0429 52 2524146 2527913 Lele56g1189 56 15357304 15358465 CCT
Lele49g0403 49 2338478 2339860 Lele52g0429 52 2524146 2527913 hybridization
Lele50g0431 50 2452972 2454245 Lele52g0429 52 2524146 2527913 hybridization