Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0416 ATGGTTCGACCCGGTCCGGAGTGGGCCACGCTTCATGTGGCTCTCTCCTGCCCTTCCTTCCTCACCATATACGTCCATCGTCTCCCGCAAATGGCTTTTGGTGATGCTTCCAGTACCCCTGCCCTTCACCTTCTTCTAGGTTTAGGTGTGACCGGTGGTCCGTCCAAGGCTGACCATCATACTAGGCCTACCAAGAGCTCCTGCAATTTCACGCCCACAACTAGCTGTGAGCCATCTTTAACCTTGGCTCTTTCCGACGACACTCACCAACAAGTCCCCAAAAAGGTTAACGTCAACAAAAGTTGCAAGGATCCTCTTGACTTTTCTCGCCAAACATCGCCTCACAGCGCCGTCTCGTATTTCTCCAGTGGGAGGGTGAAGAGGGAGAGACATCTCAGCAATAGCGAAGAGGTCGATGCGGCGGAGAGGGTTTCCTCCAGAGGGAGCGACGAAGACGAAGACGGAACCAATGCCAGAAAGAAGCTCAGACTCTCCAAAGAACAATCTGCCCTGCTAGAGGAAAGCTTCAAACAACATAGCGCCCTCAATCCTAAGCAGAAGCAGGCATTAGCCGGGCAGCTAAATCTGAGGCCGAGACAAGTTGAGGTGTGGTTCCAAAATAGGAGGGCCAGGACAAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCTTAAAGGAATGCTGCGTGACGCTGACGGATGAAAACAGGAGGCTGCAGAAGGAGGTGCAAGAGCTGAAGGCCCTGAAGCTAGCCCAACCTCTGTACATGGCGATGCCGGCGGCCACGCTCACCATGTGCCCGTCCTGCGAGAGGCTGGGCGAGGTCTACAGAGACGGCGCTTCTAATGACAAGTCCGCCTTCTCCATGGCTCACAAACCTCATTTCTACACGGCCTTCCCCAATCCGTCGGCGGCATGCTGA 921 0.5483 MVRPGPEWATLHVALSCPSFLTIYVHRLPQMAFGDASSTPALHLLLGLGVTGGPSKADHHTRPTKSSCNFTPTTSCEPSLTLALSDDTHQQVPKKVNVNKSCKDPLDFSRQTSPHSAVSYFSSGRVKRERHLSNSEEVDAAERVSSRGSDEDEDGTNARKKLRLSKEQSALLEESFKQHSALNPKQKQALAGQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKECCVTLTDENRRLQKEVQELKALKLAQPLYMAMPAATLTMCPSCERLGEVYRDGASNDKSAFSMAHKPHFYTAFPNPSAAC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0416 306 Coils Coil 228 251 - -
Lele52g0416 306 ProSiteProfiles 'Homeobox' domain profile. 155 215 IPR001356 GO:0003677
Lele52g0416 306 Pfam Homeobox associated leucine zipper 215 249 IPR003106 GO:0006355|GO:0043565
Lele52g0416 306 Pfam Homeodomain 159 213 IPR001356 GO:0003677
Lele52g0416 306 Gene3D - 163 213 - -
Lele52g0416 306 MobiDBLite consensus disorder prediction 124 160 - -
Lele52g0416 306 MobiDBLite consensus disorder prediction 53 72 - -
Lele52g0416 306 SMART halz 215 258 IPR003106 GO:0006355|GO:0043565
Lele52g0416 306 MobiDBLite consensus disorder prediction 119 160 - -
Lele52g0416 306 SUPERFAMILY Homeodomain-like 157 223 IPR009057 -
Lele52g0416 306 SMART HOX_1 157 219 IPR001356 GO:0003677
Lele52g0416 306 CDD homeodomain 159 216 IPR001356 GO:0003677
Lele52g0416 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 46 285 - -
Lele52g0416 306 ProSitePatterns 'Homeobox' domain signature. 190 213 IPR017970 GO:0000981|GO:0006355
Lele52g0416 306 FunFam Homeobox-leucine zipper protein 18 142 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0416 Lele-ChrLele52 2468748 2470809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0416 31 306 Homeobox Transcription Factor Family AT4G37790 58.131 5.56e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele52g0416 Homeodomain 7.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0389 49 2282658 2283822 Lele52g0416 52 2468748 2470809 hybridization
Lele50g0418 50 2381944 2383080 Lele52g0416 52 2468748 2470809 hybridization