Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0413 ATGGGTAGGGCTCCTTGCTGTGACAAAGCCAACGTGAAGAAAGGCCCATGGTCCCCCGAGGAAGACGCCAAGCTCAAGGGCTATATTGAGCAGCACGGCACCGGCGGCAACTGGATTGCCTTGCCCCAAAAGATAGGCCTTAAGCGATGCGGGAAAAGCTGTCGCCTACGATGGTTGAATTATCTTCGCCCAAACATCAAGCATGGGGTTTTCTCGGAGGAAGAGGACAACATAATCTGCAGCCTCTATGTTACTATTGGAAGCAGGTGGTCAATAATAGCATCACAATTACCAGGGAGAACAGATAATGATATAAAGAACTACTGGAACACTCGGTTGAGGAAGAAGCTGCTGGGCAAGCAGCGCAAGGAACAAGAGGCCGAAGCTCCCCAAAAGCTTGTCATAAAGAACGAAACTGAAAATCTGGTGACACCTGTGACCCAAAATCCCACCTGGCCAGCCCACCTGTGCGCTCCAACTTCTCAACCGTATAATCCCAACCATGGCGACTTGCCAAATAAAGTAGAGGGAACATTCTCTCAGAATCACCAGCAATCATACTCAGACACACTTTCCCATACCATAAATTCCCACTACCCACTTCTCCACCAAGTAGAACAGAACCTATACCAAACCTCAATAAATTCAGCAGCAGCACCGCCGGTGAATAATAGTAGCAGTAGCAGTTGTCAGTCGTCCAACATTTTTGAAGGCTTTGAAAGCTTGGCTGTTGATTATTGGGATTGGAGTGAGTTGGTGAGTATGAGGCCTCAACAACAAATACAACTAGATGATGCGACGTTGCAGGGTAATTACAATGGAATGGGAAGCAGCGGTGCAGCTTCAACAGAAAGCACGAGCTGGGGTGATATCACCTCTCACCTGCAGGTTTACTCTCCTCAGCTGGTTTCTGGATACGAAGGTGTCCAACACGATGATATCGCTACCTACTTTGGAGTTCAATAG 966 0.4803 MGRAPCCDKANVKKGPWSPEEDAKLKGYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGVFSEEEDNIICSLYVTIGSRWSIIASQLPGRTDNDIKNYWNTRLRKKLLGKQRKEQEAEAPQKLVIKNETENLVTPVTQNPTWPAHLCAPTSQPYNPNHGDLPNKVEGTFSQNHQQSYSDTLSHTINSHYPLLHQVEQNLYQTSINSAAAPPVNNSSSSSCQSSNIFEGFESLAVDYWDWSELVSMRPQQQIQLDDATLQGNYNGMGSSGAASTESTSWGDITSHLQVYSPQLVSGYEGVQHDDIATYFGVQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0413 321 FunFam Transcription factor RAX3 7 68 - -
Lele52g0413 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lele52g0413 321 CDD SANT 71 113 IPR001005 -
Lele52g0413 321 SMART sant 67 115 IPR001005 -
Lele52g0413 321 SMART sant 13 64 IPR001005 -
Lele52g0413 321 CDD SANT 16 62 IPR001005 -
Lele52g0413 321 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lele52g0413 321 Gene3D - 7 68 - -
Lele52g0413 321 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lele52g0413 321 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lele52g0413 321 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lele52g0413 321 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lele52g0413 321 PANTHER OS09G0431300 PROTEIN 1 265 - -
Lele52g0413 321 Gene3D - 70 141 - -
Lele52g0413 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0413 Lele-ChrLele52 2429779 2430958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0413 1 135 MYB Transcription Factor Family AT5G65790 88.235 1.55e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele52g0413 Myb_DNA-binding 1.6e-13 CL0123