Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0390 ATGAGGATGAGGAACAAACACAGGAAATCAGCAACTTTACGTTGCTGTGGAGGGAGCAGATGCTCAATGTCAGTTGGGATATGGAGCTTGGTAGGTTGTCTTCTGTTGCTTAATTGGTTTTCCAATGTTCGCCACAAAGCCACAGAGTATGGAGAGTTCCAATTGCTTGCAAGTCATCATCCTCTATTTCGTGAACTTCAACAAGTGGATGAGGAGAACATTCAAATTCCCCCACCCAGAGGAAAGAGGTCTCCTCGGGCAGAAAAACGCAGACCTAAGAGGCCGACCACACTGATAGATGAATTCCTGAATGAAGAATCCCAACTGAGACACATATTTTTTCCTAGGCAGGAGAGTGCTATAGATCCCATGAAGAATAATGGAAATGATAGTTATTACTACCATCCTGGGAGAATTTGGTTGGACTCTGATGGAAATCCCATTCAAGCCCATGGAGGGGGCATTCTGTTTGATAAAATATCAAGGACATACTATTGGTATGGTGAGTATAAAGATGGGCCCACTTATGAATCTCCCCAGAATGGAATTGCACGGGTGGACATTACAGGAGTTGGTTGCTATTCCTCCAAGGATTTGTGGACTTGGAAAAATGAGGGAATCGTCCTGGCAGCTCAGGAAACAAATGAAACCCATGATCTGCACAAGTCCAATGTACTCGAGAGGCCGAAAGTGGTTTACAATGAGAAGACTGGAAAATATGTGATGTGGATGCATATTGATGATGCCAATTATACCAAGGCAGCTGTTGGAGTAGCAATCAGTGATACTCCTGATGGTCCTTTTGATTATCTTGGCAGCCAAAGGCCTCATGGATGTGAAAGCAGGGATATGACGATTTTCAAGGATGATGATGGAGTGGCGTATCTGATGTATTCCTCGGAGGACAATAGTGAACTGCACATAGGGCCCCTCACTGAAGATTATCTCAATGTGACATCTGTCATGAGAAGGATTCTTGTTGGACAACGCAGGGAAGCGCCAGCCCTGTTCAAGCACCGTGGCACGTATTACATGATTACATCAGGCTGCACTGGATGGGCCCCAAATGAGGCACTAGCTCATGCAGCTGAGTCAATCCTGGGGCCTTGGGAGACATCAGGAAATCCATGCATTGGAGGAAACAAAGTGTTTCAAGAAACAACCTTCTTTGCTCAGAGCACTTTTGTTTTCCCTCTACCTGGGCTCCCAGGTTCATTCATTTTCATGGCTGATCGATGGAATTCAGCTGACTTAAGGGACTCGAGATATGTGTGGTTGCCTTTGGTAGTGGCAGGACCTGCGGATCGGCCTCTGGAGTTCAATTTTGAATTCCCATTGTGGTCAAGAGTTTCTATCTATTGGCATAGAAAATGGAGACTCTCTCGGGTGGGTTGGGTTTAG 1401 0.4561 MRMRNKHRKSATLRCCGGSRCSMSVGIWSLVGCLLLLNWFSNVRHKATEYGEFQLLASHHPLFRELQQVDEENIQIPPPRGKRSPRAEKRRPKRPTTLIDEFLNEESQLRHIFFPRQESAIDPMKNNGNDSYYYHPGRIWLDSDGNPIQAHGGGILFDKISRTYYWYGEYKDGPTYESPQNGIARVDITGVGCYSSKDLWTWKNEGIVLAAQETNETHDLHKSNVLERPKVVYNEKTGKYVMWMHIDDANYTKAAVGVAISDTPDGPFDYLGSQRPHGCESRDMTIFKDDDGVAYLMYSSEDNSELHIGPLTEDYLNVTSVMRRILVGQRREAPALFKHRGTYYMITSGCTGWAPNEALAHAAESILGPWETSGNPCIGGNKVFQETTFFAQSTFVFPLPGLPGSFIFMADRWNSADLRDSRYVWLPLVVAGPADRPLEFNFEFPLWSRVSIYWHRKWRLSRVGWV 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0390 466 Gene3D Glycosyl hydrolase domain; family 43 117 443 IPR023296 -
Lele52g0390 466 MobiDBLite consensus disorder prediction 69 96 - -
Lele52g0390 466 Pfam Glycosyl hydrolases family 43 188 375 IPR006710 GO:0004553|GO:0005975
Lele52g0390 466 PANTHER GLYCOSYL HYDROLASE 43 FAMILY MEMBER 27 462 - -
Lele52g0390 466 CDD GH43_CtGH43-like 148 430 - -
Lele52g0390 466 SUPERFAMILY Arabinanase/levansucrase/invertase 146 430 IPR023296 -
Lele52g0390 466 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0390 Lele-ChrLele52 2282890 2288594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0390 3 460 Glycoside Hydrolase AT3G49880 71.304 0.0 680
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0390 52 2282890 2288594 Lele53g0200 53 1674113 1675642 CCT
Lele52g0390 52 2282890 2288594 Lele54g0204 54 1756688 1758223 CCT
Lele52g0390 52 2282890 2288594 Lele55g1285 55 19329123 19330844 CCT
Lele52g0390 52 2282890 2288594 Lele56g1234 56 15683665 15685179 CCT
Lele52g0390 52 2282890 2288594 Lele52g0390 52 2282890 2288594 ECH
Lele49g0361 49 2126847 2133024 Lele52g0390 52 2282890 2288594 hybridization