Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0385 ATGAAGTACAATCCTCGGGTCTCCAGCTCTCGTCGCAAGAACCGCAAGGCGCACTTCACGGCGCCTTCCAGCGTTCGCCGTATTTTGATGAGCGCCCCTCTCTCCAATGACCTTCGCTCCAAATACAACGTGCGGTCCATGCCGGTTCGCAAGGATGATGAGGTTCAAGTTGTTCGTGGCACCTATAAAGGTCGTGAGGGGAAGGTGGTTCAGGTCTACCGCCGCAAATGGGTCATTCACATCGAGCGGATTACTCGTGAGAAGGTAAATGGTTCAACCGTGAATGTTGGTATTAACCCTTCCAAAGTTGTCATCACGAAGCTGAGGTTGGATAAGGACCGCAAGTCCTTGCTTGATCGCAAGGCCAAGGGACGTGCGGCCGCCGACAAGGTCAAGGGAACCAAGTTTACTGCTGAGGACATTATGCAAAATGTTGATTAG 441 0.5215 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSNDLRSKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGRAAADKVKGTKFTAEDIMQNVD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0385 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lele52g0385 146 SMART kow_9 48 75 IPR005824 -
Lele52g0385 146 Gene3D - 1 144 IPR014722 -
Lele52g0385 146 TIGRFAM rplX_A_E: ribosomal protein uL24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lele52g0385 146 FunFam 60S ribosomal protein L26 1 144 - -
Lele52g0385 146 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lele52g0385 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lele52g0385 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 142 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lele52g0385 146 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Lele52g0385 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
Lele52g0385 146 Pfam KOW motif 51 82 IPR005824 -
Lele52g0385 146 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0385 Lele-ChrLele52 2267845 2268285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0385 1 146 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 89.041 1.27e-95 270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0385 52 2267845 2268285 Lele52g0385 52 2267845 2268285 ECH
Lele49g0357 49 2113907 2114260 Lele52g0385 52 2267845 2268285 hybridization
Lele50g0393 50 2203097 2203537 Lele52g0385 52 2267845 2268285 hybridization