Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0373 ATGGCCATAAGGCCACTACAAATCACCATCTCGCTCAACAGATTAATCTCTCCTTTTCTCCCTAATCCTTCGTTTTCATTTTCGCGCTCTTGCTGCAATTCTAATTCCAATCTCGCGCCATCTTCTCATTCATTTCCTCACATTATTGCCTTCCGTCACTTAGCTGCGTCCGCCGCAACTCCGCTTTCACGCCCTCACAAATACCACCCATCACCGCAGCCCCACGAACGCCGCCTGCGACCACCGTCACAACCTGACACCCTGGCGCACAAGATTGGAAAGTCAACTCGCCGCCCGGGCGCCCCCTCTAAGGCGAGGGTTTATGCTGACGTCAATCTCATCCGTCCCAAGGAATACTGGGACTACGAGTCCCTAACCGTCCAGTGGGGGGAGCAGGATGATTATGAGGTAGTCAGGAAGGTGGGAAGAGGGAAATACAGTGAGGTGTTCGAGGGTGTTCACTGCACGGACAAAGAAAAATGCGTCATCAAGATTCTTAAACCAGTCAAGAAGAAGAAGATCAAGAGGGAGATCAAAATACTGCAGAATCTTTGTGGAGGGCCTAATATTGTGAAATTGATTGATATTGTTAGAGACCAGCAATCAAAGACTCCAAGCCTAATCTTTGAACATGTTAATAACACTGATTTCAAAGTTCTCTATCCAACACTGTCAGACTATGATATACGATTTTACATCTATGAACTTCTAAAGGCATTGGATTATTGCCACTCACAAGGCATCATGCACCGGGATGTGAAGCCACATAATGTAATGATTGACCATGAACAGCGTAAGCTTCGTTTGATAGATTGGGGGCTGGCAGAGTTTTATCATCCTGGCCAAGAATATAATGTCCGTGTGGCATCAAGATATTTTAAAGGCCCTGAGCTCCTTGTTGATCTTCAAGATTATGATTACTCTTTAGATTTGTGGAGCCTTGGTTGCATGTTTGCTGGAATGATATTCCGTAAGGAGCCATTCTTTTATGGACATGATAATTATGACCAGCTAGTCAAAGTTGCGAAGGTACTTGGGACAGATGAATTAAATGCATATCTGAGCAAGTATCGCATAGAGTTGGACCCAAATCTCGCTGCACTTGTTGGGAGGCATAGCCGGAAACCTTGGGAAAAGTTCATTAATCTTGACAATCAACACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGCTACTGCAGTATGATCACCAAGAACGGCCTACTGCCAAAGAAGCCATGGACCATCCCTACTTCAATCCTGTCAGAAATGCAGAAAGTAGCCGAAATCGTAGGCACTGA 1305 0.4552 MAIRPLQITISLNRLISPFLPNPSFSFSRSCCNSNSNLAPSSHSFPHIIAFRHLAASAATPLSRPHKYHPSPQPHERRLRPPSQPDTLAHKIGKSTRRPGAPSKARVYADVNLIRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDKEKCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLIDIVRDQQSKTPSLIFEHVNNTDFKVLYPTLSDYDIRFYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKVAKVLGTDELNAYLSKYRIELDPNLAALVGRHSRKPWEKFINLDNQHLAVPEAVDFVDKLLQYDHQERPTAKEAMDHPYFNPVRNAESSRNRRH 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0373 434 FunFam Casein kinase II subunit alpha 212 423 - -
Lele52g0373 434 FunFam Casein kinase II subunit alpha 121 211 - -
Lele52g0373 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Lele52g0373 434 Pfam Protein kinase domain 135 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0373 434 SMART serkin_6 135 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0373 434 MobiDBLite consensus disorder prediction 62 102 - -
Lele52g0373 434 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Lele52g0373 434 SUPERFAMILY Protein kinase-like (PK-like) 107 424 IPR011009 -
Lele52g0373 434 MobiDBLite consensus disorder prediction 69 84 - -
Lele52g0373 434 ProSiteProfiles Protein kinase domain profile. 135 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0373 434 PANTHER CASEIN KINASE II SUBUNIT ALPHA 98 429 IPR045216 GO:0004674|GO:0006468
Lele52g0373 434 CDD STKc_CK2_alpha 116 420 IPR045216 GO:0004674|GO:0006468
Lele52g0373 434 Gene3D Phosphorylase Kinase; domain 1 188 211 - -
Lele52g0373 434 Gene3D Phosphorylase Kinase; domain 1 126 184 - -
Lele52g0373 434 MobiDBLite consensus disorder prediction 411 434 - -
Lele52g0373 434 Gene3D Transferase(Phosphotransferase) domain 1 212 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0373 Lele-ChrLele52 2186860 2192285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0373 133 421 Core Cell Cycle Gene Families AT1G76540 30.380 8.42e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lele52g0373 Pkinase 2.6e-65 CL0016