LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele52g0363	ATGCGGGAGAGGGTATTCGGGTTGACTGGAAAGAGAAACTTGCCCAAGTGGGTTAAAGCCGCTAGCTTGCAGAATTTGATCTTCCCATATGATGATATTGACAAGTTGGTGAGAAAGGAGAGGGAAGGACCCGTAAACTTTGTATTTTGGGCTTTGTTTGGTGCAATCTATCTGTGTTTTGGTATGCCTGAAGTATATCGCGTTCTTTTTGAAGCCTTTGGAATGGATCCAGATGCTGAGGATTGCCAACCCAGATTACGTAGACAACTTGAAGATGTAGATCATGTATCTGCTGCATTTGAAGGCAAGCTTAGCTGGCAAGAAGTGGCTGCATACAAGGCAAGGTCTATATGTCTTCTGCTAAGCAGACCACCGGTTATGCAAGCTCTGGGATATCCCTTAGAATTGACAGATAGCATTCAAGAAATTGCTGAGGCTCGGAATATAGAACTTGGACTTGGGTTACAGTTCCTTTTCCTTATTTCCGTTTTCATCATTCCTCTCGTGGCAGCATATCTGAGGATTGATACTAACTTACTTTGTTTCTTGCATCCATCGAAATACAAATTTGAGCATCCTCGATTTTGCTATGAGAGACTAGAATATCTTGGCCAAAAGATACAGGATTTGGTGATGGCTGAACGATTGTTGACGAAGCATTTAGATGCTCCAGGTTTGTGGCTACAGGAGAGGCACCGTCGCCTTCTTATGAACAATTACTGTGGAAGATATTTGAGGGACAAACGTCTCCACCGTTTCATCATATATTCTGAACAGGTACAGGACCGTTATGAGCATAACCGGAGAATGAGGAACCCTGCCACGACAGCTGTTCAGCAAGCCATTCATGGTCTTGCATATGCTGTTTATGGGAAACGTGATGTGGTTTCACACATGATATATGCGCATAAACCAGCCATACTTCTCCGTTTATCGCTAGTGTGCGCCCTCGTCGCCTTGCGTGCGCCGGTTGCGCACCCACCTAACGTGCGCATCCTCTCCTTCCCCATCCTCCCGATCGATACTATCGCCACCCCCACCACCATCCTCCACCTGTGCAACAAGCCCAATTACCATACGGGCGAGATCTCGGATTTTTATTGCCGAGCCATGTCAAAGGCGCGCGTCTACGCGGATGTCAATGTCCTTCGCCCCAAGGAGTATTGGGATTACGAGTCTCTCACCGTTCAGTGGGGTGATCAAGATGATTATGAGGTCGTGCGGAAAGTAGGAAGGGGAAAGTATAGTGAGGTGTTTGAAGGCATCAATGTTAATAGCAATGAGCGCTGTGTAATTAAGATTTTGAAGCCAGTAAAAAAGAAGAAGATTAAAAGAGAGATTAAAATACTCCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATCAGCATTCAAAAACCCCCAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATCTACGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGATCATGAATTGCGAAAACTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTCAAGGGCCCTGAACTTTTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTCCGCAAGGAACCATTCTTTTATGGGCATGACAACCATGATCAACTTGTGAAGATAGCTAAGGTGCTTGGAACTGATGAATTGAATGCATATCTGAATAAGTATCATCTAGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGGAAACCCTGGACTAAATTTATTAACGCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATCGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGATCGGCTTACTGCAAGAGAAGCTATGGCACATCCATATTTCTTTCAGGTAAGGGCTGCAGAAAGTAGCAGAATGAGGACACAGTAA	2112	0.4375	MRERVFGLTGKRNLPKWVKAASLQNLIFPYDDIDKLVRKEREGPVNFVFWALFGAIYLCFGMPEVYRVLFEAFGMDPDAEDCQPRLRRQLEDVDHVSAAFEGKLSWQEVAAYKARSICLLLSRPPVMQALGYPLELTDSIQEIAEARNIELGLGLQFLFLISVFIIPLVAAYLRIDTNLLCFLHPSKYKFEHPRFCYERLEYLGQKIQDLVMAERLLTKHLDAPGLWLQERHRRLLMNNYCGRYLRDKRLHRFIIYSEQVQDRYEHNRRMRNPATTAVQQAIHGLAYAVYGKRDVVSHMIYAHKPAILLRLSLVCALVALRAPVAHPPNVRILSFPILPIDTIATPTTILHLCNKPNYHTGEISDFYCRAMSKARVYADVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWTKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFFQVRAAESSRMRTQ	703

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele52g0363	703	CDD	STKc_CK2_alpha	385	689	IPR045216	GO:0004674\|GO:0006468
Lele52g0363	703	Pfam	Protein kinase domain	404	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lele52g0363	703	PANTHER	CASEIN KINASE II SUBUNIT ALPHA	369	699	IPR045216	GO:0004674\|GO:0006468
Lele52g0363	703	FunFam	Casein kinase II subunit alpha	481	692	-	-
Lele52g0363	703	SMART	serkin_6	404	689	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lele52g0363	703	CDD	RIBOc	179	303	IPR000999	GO:0004525\|GO:0006396
Lele52g0363	703	SUPERFAMILY	RNase III domain-like	175	303	IPR036389	GO:0004525\|GO:0006396
Lele52g0363	703	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	517	529	IPR008271	GO:0004672\|GO:0006468
Lele52g0363	703	Gene3D	Phosphorylase Kinase; domain 1	404	480	-	-
Lele52g0363	703	ProSitePatterns	Protein kinases ATP-binding region signature.	410	433	IPR017441	GO:0005524

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele52g0363	Lele-ChrLele52	2126312	2134617	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele52g0363	402	689	Core Cell Cycle Gene Families	AT1G76540	29.450	1.29e-40	149

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CK2	Lele52g0363		Pkinase	2.2e-65	CL0016

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lele52g0363	52	2126312	2134617	Lele53g0181	53	1507466	1514443	CCT
Lele52g0363	52	2126312	2134617	Lele54g0183	54	1563643	1568567	CCT
Lele52g0363	52	2126312	2134617	Lele55g1304	55	19489352	19495129	CCT
Lele52g0363	52	2126312	2134617	Lele56g1253	56	15852715	15857683	CCT
Lele52g0363	52	2126312	2134617	Lele52g0363	52	2126312	2134617	ECH
Lele49g0339	49	1991214	1994321	Lele52g0363	52	2126312	2134617	hybridization
Lele50g0358	50	2049178	2054970	Lele52g0363	52	2126312	2134617	hybridization

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