Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0363 ATGCGGGAGAGGGTATTCGGGTTGACTGGAAAGAGAAACTTGCCCAAGTGGGTTAAAGCCGCTAGCTTGCAGAATTTGATCTTCCCATATGATGATATTGACAAGTTGGTGAGAAAGGAGAGGGAAGGACCCGTAAACTTTGTATTTTGGGCTTTGTTTGGTGCAATCTATCTGTGTTTTGGTATGCCTGAAGTATATCGCGTTCTTTTTGAAGCCTTTGGAATGGATCCAGATGCTGAGGATTGCCAACCCAGATTACGTAGACAACTTGAAGATGTAGATCATGTATCTGCTGCATTTGAAGGCAAGCTTAGCTGGCAAGAAGTGGCTGCATACAAGGCAAGGTCTATATGTCTTCTGCTAAGCAGACCACCGGTTATGCAAGCTCTGGGATATCCCTTAGAATTGACAGATAGCATTCAAGAAATTGCTGAGGCTCGGAATATAGAACTTGGACTTGGGTTACAGTTCCTTTTCCTTATTTCCGTTTTCATCATTCCTCTCGTGGCAGCATATCTGAGGATTGATACTAACTTACTTTGTTTCTTGCATCCATCGAAATACAAATTTGAGCATCCTCGATTTTGCTATGAGAGACTAGAATATCTTGGCCAAAAGATACAGGATTTGGTGATGGCTGAACGATTGTTGACGAAGCATTTAGATGCTCCAGGTTTGTGGCTACAGGAGAGGCACCGTCGCCTTCTTATGAACAATTACTGTGGAAGATATTTGAGGGACAAACGTCTCCACCGTTTCATCATATATTCTGAACAGGTACAGGACCGTTATGAGCATAACCGGAGAATGAGGAACCCTGCCACGACAGCTGTTCAGCAAGCCATTCATGGTCTTGCATATGCTGTTTATGGGAAACGTGATGTGGTTTCACACATGATATATGCGCATAAACCAGCCATACTTCTCCGTTTATCGCTAGTGTGCGCCCTCGTCGCCTTGCGTGCGCCGGTTGCGCACCCACCTAACGTGCGCATCCTCTCCTTCCCCATCCTCCCGATCGATACTATCGCCACCCCCACCACCATCCTCCACCTGTGCAACAAGCCCAATTACCATACGGGCGAGATCTCGGATTTTTATTGCCGAGCCATGTCAAAGGCGCGCGTCTACGCGGATGTCAATGTCCTTCGCCCCAAGGAGTATTGGGATTACGAGTCTCTCACCGTTCAGTGGGGTGATCAAGATGATTATGAGGTCGTGCGGAAAGTAGGAAGGGGAAAGTATAGTGAGGTGTTTGAAGGCATCAATGTTAATAGCAATGAGCGCTGTGTAATTAAGATTTTGAAGCCAGTAAAAAAGAAGAAGATTAAAAGAGAGATTAAAATACTCCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTTAGAGATCAGCATTCAAAAACCCCCAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATCTACGAGCTCCTTAAGGCCTTGGATTACTGTCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGATCATGAATTGCGAAAACTTCGCTTGATAGACTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATACAATGTTCGTGTGGCTTCAAGATACTTCAAGGGCCCTGAACTTTTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTCCGCAAGGAACCATTCTTTTATGGGCATGACAACCATGATCAACTTGTGAAGATAGCTAAGGTGCTTGGAACTGATGAATTGAATGCATATCTGAATAAGTATCATCTAGAGCTTGATCCTCAACTTGATGCACTTGTTGGAAGGCACAGTCGGAAACCCTGGACTAAATTTATTAACGCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATCGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGATCGGCTTACTGCAAGAGAAGCTATGGCACATCCATATTTCTTTCAGGTAAGGGCTGCAGAAAGTAGCAGAATGAGGACACAGTAA 2112 0.4375 MRERVFGLTGKRNLPKWVKAASLQNLIFPYDDIDKLVRKEREGPVNFVFWALFGAIYLCFGMPEVYRVLFEAFGMDPDAEDCQPRLRRQLEDVDHVSAAFEGKLSWQEVAAYKARSICLLLSRPPVMQALGYPLELTDSIQEIAEARNIELGLGLQFLFLISVFIIPLVAAYLRIDTNLLCFLHPSKYKFEHPRFCYERLEYLGQKIQDLVMAERLLTKHLDAPGLWLQERHRRLLMNNYCGRYLRDKRLHRFIIYSEQVQDRYEHNRRMRNPATTAVQQAIHGLAYAVYGKRDVVSHMIYAHKPAILLRLSLVCALVALRAPVAHPPNVRILSFPILPIDTIATPTTILHLCNKPNYHTGEISDFYCRAMSKARVYADVNVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWTKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFFQVRAAESSRMRTQ 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0363 703 CDD STKc_CK2_alpha 385 689 IPR045216 GO:0004674|GO:0006468
Lele52g0363 703 Pfam Protein kinase domain 404 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0363 703 PANTHER CASEIN KINASE II SUBUNIT ALPHA 369 699 IPR045216 GO:0004674|GO:0006468
Lele52g0363 703 FunFam Casein kinase II subunit alpha 481 692 - -
Lele52g0363 703 SMART serkin_6 404 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0363 703 CDD RIBOc 179 303 IPR000999 GO:0004525|GO:0006396
Lele52g0363 703 SUPERFAMILY RNase III domain-like 175 303 IPR036389 GO:0004525|GO:0006396
Lele52g0363 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Lele52g0363 703 Gene3D Phosphorylase Kinase; domain 1 404 480 - -
Lele52g0363 703 ProSitePatterns Protein kinases ATP-binding region signature. 410 433 IPR017441 GO:0005524
Lele52g0363 703 FunFam Casein kinase II subunit alpha 390 480 - -
Lele52g0363 703 Gene3D Transferase(Phosphotransferase) domain 1 481 689 - -
Lele52g0363 703 SUPERFAMILY Protein kinase-like (PK-like) 377 692 IPR011009 -
Lele52g0363 703 ProSiteProfiles Protein kinase domain profile. 404 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0363 703 Gene3D Ribonuclease III domain 175 304 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0363 Lele-ChrLele52 2126312 2134617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0363 402 689 Core Cell Cycle Gene Families AT1G76540 29.450 1.29e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lele52g0363 Pkinase 2.2e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0363 52 2126312 2134617 Lele53g0181 53 1507466 1514443 CCT
Lele52g0363 52 2126312 2134617 Lele54g0183 54 1563643 1568567 CCT
Lele52g0363 52 2126312 2134617 Lele55g1304 55 19489352 19495129 CCT
Lele52g0363 52 2126312 2134617 Lele56g1253 56 15852715 15857683 CCT
Lele52g0363 52 2126312 2134617 Lele52g0363 52 2126312 2134617 ECH
Lele49g0339 49 1991214 1994321 Lele52g0363 52 2126312 2134617 hybridization
Lele50g0358 50 2049178 2054970 Lele52g0363 52 2126312 2134617 hybridization