Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0357 ATGTTCTCGTGTCCAATCTGTAGAGCTCACGGTTTCAGCAGTAACACGGAGTCAGCTGGGACCGCTTTCCCGGTGGAAAATGCGTACGAGCTGTTAGGAGTGTCACATACCAGTTCGTTTGCTGAGATCAAAACGTCTTTTCGCAGATTGGCCAAGGAAACTCACCCTGACCTTGCTGACTCAAATGACGATTCTTCTACGTCGCGACGATTTGTGCAAATCCTGGCCGCTTACGAGATTCTATCAGATTCCAAGAAGAGAGCTCATTATGACAGATACCTGTTGTCTCAAAAGAAGCTTGTGGAGAAGCATACTGGGCAGGGTTCAAAATTACGCTTCTATAGATCACATGAAACAACTTGCAAGGAGATGGAAGTTGTTGAATGGTTAAAGTGGTACAGATTAGCTATAAATGATATTTTGTCAGATAAGAGGGTAGTAGTTGGAACAGGCTATTTTGATGTACTTGAGAGAGATTTTTACTCAGCCATACATGCGGCTTTCTTTGGCCCTGAAATTGAGTCAATGGAGCTTCTTCCTGAGTGCTTTGAGGCTGAAGAAAGGTCCACTTGTGAAACAACAGAGGTTTTACACATAGTATCAGGTCGTGATCTTTTTGGGATGGTTTGCCTAGCCAATAAGAACCCAGAGATATCATCTACCAACAACGAAAAGTTAACTTCTTTCAGATCCTTCCACCCAGGCCTATGTCAATCTATAAAGAATGCAAACATCCACACAGGTGCAGAAGTTCCATATGGATTTGGAATTCCACAAATTCATGACTCTAAAATATCAAGTCACATATCAGATGCATATAGAGATCTAGAGTTGCATGTCTCTGGAAGGGTGGTCGCTGTGGCCTCCAGGGTCCCTCCCGGAAGCTATTCTGATGCTGACGTTGCAGAAGATCACATTTATGTTTATCTCAATTCAGATGAACACACCAAGCATACAAACAGCTGTGACTCTAAAAATTTCTTCGCAAGTAAATCAGCTGTCACACGAATTCATATAGGAACCATAGCTGGGCTTGGGACCAGTCCAGATGAAAGTTCATGTAATGTCTACGACATGGCCAAGACCCATGTGATCATGAAACACAGGACCTTGCTGGTGAAGCACATGCACTGGTATCAAGTTGGAAAAAAAGTTTCTATTTGTGAGTGTAGATGCACGAGAGCCAAATTACCACCAAGCAAAATTGATGGTGCGATATTGCAGCTATTATTGCTGAATGCTTACAACATCTATCTCTATACTGATCCTAACTGGGGTTGGTATGTTGAAACATATGGCAAAGATAAGAAAGGGCGAACAATCCCATCACAAAGGTTATGGGATGGCTGGGATGATGGTCTGCATTTTGAGAGAAGACTTCATCCAGCAATGTATCTTCTTGCTCTTGCATATAGGACACTTGATCTTGAATATGCCAAAGTTATTGGATTCACTACTAATGTTTATTTAGTGATTTCAGAAGAGTTGACTTGTGATTGTGAAGCGGCATTGACGCTGTATACTGTTGTTAAGTTTCAAGATGACTCTTAG 1551 0.4204 MFSCPICRAHGFSSNTESAGTAFPVENAYELLGVSHTSSFAEIKTSFRRLAKETHPDLADSNDDSSTSRRFVQILAAYEILSDSKKRAHYDRYLLSQKKLVEKHTGQGSKLRFYRSHETTCKEMEVVEWLKWYRLAINDILSDKRVVVGTGYFDVLERDFYSAIHAAFFGPEIESMELLPECFEAEERSTCETTEVLHIVSGRDLFGMVCLANKNPEISSTNNEKLTSFRSFHPGLCQSIKNANIHTGAEVPYGFGIPQIHDSKISSHISDAYRDLELHVSGRVVAVASRVPPGSYSDADVAEDHIYVYLNSDEHTKHTNSCDSKNFFASKSAVTRIHIGTIAGLGTSPDESSCNVYDMAKTHVIMKHRTLLVKHMHWYQVGKKVSICECRCTRAKLPPSKIDGAILQLLLLNAYNIYLYTDPNWGWYVETYGKDKKGRTIPSQRLWDGWDDGLHFERRLHPAMYLLALAYRTLDLEYAKVIGFTTNVYLVISEELTCDCEAALTLYTVVKFQDDS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0357 516 CDD DnaJ 27 83 IPR001623 -
Lele52g0357 516 SUPERFAMILY Chaperone J-domain 25 97 IPR036869 -
Lele52g0357 516 SMART dnaj_3 26 86 IPR001623 -
Lele52g0357 516 ProSitePatterns Nt-dnaJ domain signature. 71 90 IPR018253 -
Lele52g0357 516 ProSiteProfiles dnaJ domain profile. 27 94 IPR001623 -
Lele52g0357 516 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 7 480 - -
Lele52g0357 516 PRINTS DnaJ domain signature 47 62 IPR001623 -
Lele52g0357 516 PRINTS DnaJ domain signature 29 47 IPR001623 -
Lele52g0357 516 PRINTS DnaJ domain signature 66 86 IPR001623 -
Lele52g0357 516 Pfam DnaJ domain 27 91 IPR001623 -
Lele52g0357 516 Gene3D DnaJ domain 16 112 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0357 Lele-ChrLele52 2098397 2102638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0357 29 91 C2H2 Transcription Factor Family AT1G74250 45.455 6.25e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0357 52 2098397 2102638 Lele52g0357 52 2098397 2102638 ECH
Lele49g0332 49 1956259 1959873 Lele52g0357 52 2098397 2102638 hybridization
Lele50g0351 50 2014365 2017755 Lele52g0357 52 2098397 2102638 hybridization