Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0353 ATGCTGGAATTCTGCCGAAGGCCATTAGAGACATGCTTTGGTGGAGGAGACAACGATTCGCTTCTCTGGCATACGGCCTTGAAGCCCCACGCTTTAGGTGATTATTCAATTGCTATAGTTCAAGCTAACTCCTCTCTTGAAGACCAAGCTCAAGTTCTTGCCTCTCCTTCTGCAACTTATGTTGGGATATATGACGGACATGGCGGCCCCGAAGCTTCCCGTTTCATCACCAACCATCTCTTCCCCATTCTCCAGAAGTTTGCTTCTGAAGAAGGTGGTCTGTCGGAGGATGTGATAAAGAAAGCCTTTAATGAAACTGAAGAGGAATTCTTACAGTTTGTGAAGCAATCAGTGACTACTCGGCCGCAGATTGTTTCAGTGGGTTCATGTTGTCTTGTTGGGGTGATTTCTAACAACGTTCTTTATGTTGCTAATCTTGGGGATTCGAGGGCAGTTCTGGGAAAGAAAGTTAATTGTTCTGTGGTGGCAGAACGCTTGTCCACTGATCATAATGTTGCAGTTGAAGAGATTAGAAAGGAAGTTATGGCACTTCACCCCGACGATGAGCACGTTGTGGTTCACACTCAGGGAGTTTGGAGAATCAAGGGCATTATTCAGGTGTCAAGATCAATTGGAGATGTTTTTCTAAAGAAACCTGAGTTTAACAGAGATCCTCTGTTCCAACAATTTGGATATTTGTTGCCCTTAAAGCGACCTGTTATGACAGCTGAGCCATCAATATTGACTCGAAAGTTAAAACCAGACGACATGTTCTTGATATTTGCATCTGACGGCCTTTGGGAGAATTTGGCCGATGAAGCCGCCGTTGACATCATCTTCAAAAATCCAAGACCTGGAATAGCGAAACGATTGGTGAGAGCTGCACTAGAAGAGGCTGCAAGGAAGAAAGAAATGAGATACAAGGATTTGGTGAGAGTTGAGAAAGGTGTTAGGCGGCATTTTCATGATGATATTACAGTGATCGTCATGTACTTGGATCATTCACAGGATTCATTGAGCGGGTTGAAACGACATGGCGTCTATGATGGCTGCACTAATGCTCCTGTTGATATCTTCTCTCTAAATGCAGATAAAGATGATCTCTAA 1107 0.439 MLEFCRRPLETCFGGGDNDSLLWHTALKPHALGDYSIAIVQANSSLEDQAQVLASPSATYVGIYDGHGGPEASRFITNHLFPILQKFASEEGGLSEDVIKKAFNETEEEFLQFVKQSVTTRPQIVSVGSCCLVGVISNNVLYVANLGDSRAVLGKKVNCSVVAERLSTDHNVAVEEIRKEVMALHPDDEHVVVHTQGVWRIKGIIQVSRSIGDVFLKKPEFNRDPLFQQFGYLLPLKRPVMTAEPSILTRKLKPDDMFLIFASDGLWENLADEAAVDIIFKNPRPGIAKRLVRAALEEAARKKEMRYKDLVRVEKGVRRHFHDDITVIVMYLDHSQDSLSGLKRHGVYDGCTNAPVDIFSLNADKDDL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0353 368 ProSitePatterns PPM-type phosphatase domain signature. 60 68 IPR000222 GO:0043169
Lele52g0353 368 CDD PP2Cc 41 332 IPR001932 -
Lele52g0353 368 FunFam Probable protein phosphatase 2C 42 25 340 - -
Lele52g0353 368 SMART PP2C_4 24 330 IPR001932 -
Lele52g0353 368 PANTHER PROTEIN PHOSPHATASE 35 330 - -
Lele52g0353 368 Gene3D - 24 339 IPR036457 -
Lele52g0353 368 Pfam Protein phosphatase 2C 53 301 IPR001932 -
Lele52g0353 368 ProSiteProfiles PPM-type phosphatase domain profile. 34 332 IPR001932 -
Lele52g0353 368 SUPERFAMILY PP2C-like 38 334 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0353 Lele-ChrLele52 2079784 2082742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0353 16 338 PP2C-type Phosphatase Gene Family AT3G51370 54.354 9.48e-139 398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0353 52 2079784 2082742 Lele53g0174 53 1457521 1458461 CCT
Lele52g0353 52 2079784 2082742 Lele55g1310 55 19540104 19541044 CCT
Lele52g0353 52 2079784 2082742 Lele56g1261 56 15910740 15912010 CCT
Lele51g0344 51 1957834 1960771 Lele52g0353 52 2079784 2082742 ECH
Lele52g0353 52 2079784 2082742 Lele52g0353 52 2079784 2082742 ECH
Lele49g0330 49 1941547 1943859 Lele52g0353 52 2079784 2082742 hybridization
Lele50g0348 50 1994901 1997970 Lele52g0353 52 2079784 2082742 hybridization