Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0350 ATGGCGCGGGAATCAGCTCAGCGAATCTTTACCTTCTCCCTAATCCTATGCCTTGCGCAGTTTGGCCCCTGGATTCTGGTCTGTGTCTCCGGCTATCCTAGCCACATTTTGCACTTCAGGAAGTTCCACGAAGGCGCTCGCCCAGCTATGATATTGCCGCTGTATCTCTCTGTTTCCAATTCTTCCATTTCCGGCTTCAATTCCCGTCGCCAACTCCAGAGATCCGAGGCCCAACACCACCCGAACGCTCACATGGGGCTTCATGATGATCTTCTCCTTAACGGGTACTATACTACGCGGCTTCGCATCGGGACTCCTCCGCAGATGTTTGCTCTTATTGTTGATACGGGAAGTACTGTGACGTATGTCCCGTGCTCTACCTGCGAACAGTGTGGCACGCACCAGGACCCGAGGTTCCAGCCGGAATTGTCAAGCACCTATAAACCTGTCAAATGCTCATTGGACTGCAACTGCGACAGTGACAGAAATCAGTGCACATATGAGAGGCAGTATGCTGAAATGAGTACTAGCAGTGGTGTCCTTGGTAATGATGTCATATCCTTTGGAAATCAAAGTGAGCTTGACCCTCAACGTGCTGTTTTTGGTTGTGAAAATCTTGAGACTGGTGATCTTTATAGTCAGCATGCTGATGGCATCATGGGTTTGGGCCGTGGAGATCTCAGTATTGTGGATCAACTAGTTGAAAAAAATGCAATAAGTGATTCTTTTTCACTATGCTATGGTGGAATGGATTTTGGTGGGGGTGCTATGGTTCTTGGTGGCATATCTCCCCCATCAGACATGATCTTTGCATATTCAGATCCTGTGCGCAGTCCATACTACAATGTCGATTTGAAGGAAATACACGTTGCTGGGAAGAAGCTGTCTTTAAACCCAAAGGTTTTTGATGGAAAACATGGAGCTGTGTTGGATAGTGGTACAACGTACGCGTACCTACCTGAAGAAGCGTTCCTTGCATTTAAAGATGCTATTAAGAAGGAACTTCAGTCTCTCAAGCAAATACCTGGTCCAGATCCAAATTATAACGATATATGCTTTGCCGGTGCTGAAATTTCTGTTTCACAACTCTCTGAAAGCTTTCCAACAGTTGACATGGTATTTGGAAATGGAAATGGTCACAAGCTGTCTCTGTCACCTGAAAACTACTTATTCAGGCATTCAAAAGTGCGAGGTGCATATTGTCTTGGGATTTTCCAAAATGGAAAGGATCCAACTACTCTTCTAGGAGGTATCGTTGTTCGAAACACTCTTGTAATGTATGATCGAGAGAATGCAAGGGTTGGTTTCTGGAAGACTAATTGTTCGGAGTTATGGGAAAGGCTACAGTTATCTGCTTCCTCGCCGCCAGAGTCTTCTGAAGGAGCAAATTCTACTGAAGCTCTTGCACCTTCAGTCGCTCCATCTGCATTACAGCATGATTTACATCCAGGGGAACTCCAAATTGCGCAAATAACATTTGAAATTTCATTTAACATCAGCTACTCAGACATGAAAGATCAGATTACAGACCTGGCTGGACTCATAGCTCATGAGTTAGATGTTAACACCTCACAGGTTCACTTATTGAATTGTTCTTCTCTCGGAAGTGGTTCCCTCTCTAGATGGGCCATAACCCCAGATACATCTTCTGATTTCATGTCTAACACAACTGCGATGAGTATAATTTCCCGGCTTGCTGAGCAGCGCATGCAACTTCCTAGCCCCTTTGGAAGTTATAAGTTAGTTGGTTGGAATGTCGAGCCTCCATCAAAATGCTACTGGAATATTCTTAATTTTGAAAAAAAGACAGCAGCAAGTTGTGCATTCATACAAGCCGGTAGGCGTTTCTGCTCCAGAGCAGGAACTTCAACCGTTGTGAGCCATGTCTTCGCCACTAGTGCTTTGACGGTTTGCCCGATCAATTTCAATAGAACAGTGGACTCCTAA 1947 0.4515 MARESAQRIFTFSLILCLAQFGPWILVCVSGYPSHILHFRKFHEGARPAMILPLYLSVSNSSISGFNSRRQLQRSEAQHHPNAHMGLHDDLLLNGYYTTRLRIGTPPQMFALIVDTGSTVTYVPCSTCEQCGTHQDPRFQPELSSTYKPVKCSLDCNCDSDRNQCTYERQYAEMSTSSGVLGNDVISFGNQSELDPQRAVFGCENLETGDLYSQHADGIMGLGRGDLSIVDQLVEKNAISDSFSLCYGGMDFGGGAMVLGGISPPSDMIFAYSDPVRSPYYNVDLKEIHVAGKKLSLNPKVFDGKHGAVLDSGTTYAYLPEEAFLAFKDAIKKELQSLKQIPGPDPNYNDICFAGAEISVSQLSESFPTVDMVFGNGNGHKLSLSPENYLFRHSKVRGAYCLGIFQNGKDPTTLLGGIVVRNTLVMYDRENARVGFWKTNCSELWERLQLSASSPPESSEGANSTEALAPSVAPSALQHDLHPGELQIAQITFEISFNISYSDMKDQITDLAGLIAHELDVNTSQVHLLNCSSLGSGSLSRWAITPDTSSDFMSNTTAMSIISRLAEQRMQLPSPFGSYKLVGWNVEPPSKCYWNILNFEKKTAASCAFIQAGRRFCSRAGTSTVVSHVFATSALTVCPINFNRTVDS 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0350 648 Gene3D Acid Proteases 72 260 IPR021109 -
Lele52g0350 648 PANTHER ASPARTYL PROTEASES 60 435 IPR001461 GO:0004190|GO:0006508
Lele52g0350 648 Pfam Xylanase inhibitor C-terminal 281 436 IPR032799 -
Lele52g0350 648 PRINTS Pepsin (A1) aspartic protease family signature 308 319 IPR001461 GO:0004190|GO:0006508
Lele52g0350 648 PRINTS Pepsin (A1) aspartic protease family signature 255 268 IPR001461 GO:0004190|GO:0006508
Lele52g0350 648 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Lele52g0350 648 PRINTS Pepsin (A1) aspartic protease family signature 103 123 IPR001461 GO:0004190|GO:0006508
Lele52g0350 648 SUPERFAMILY Acid proteases 93 446 IPR021109 -
Lele52g0350 648 CDD pepsin_A_like_plant 96 441 IPR034161 -
Lele52g0350 648 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 112 123 IPR001969 GO:0004190|GO:0006508
Lele52g0350 648 Gene3D Acid Proteases 269 445 IPR021109 -
Lele52g0350 648 FunFam Aspartyl protease family protein 81 260 - -
Lele52g0350 648 FunFam Eukaryotic aspartyl protease family protein 268 445 - -
Lele52g0350 648 Pfam Xylanase inhibitor N-terminal 97 261 IPR032861 -
Lele52g0350 648 ProSiteProfiles Peptidase family A1 domain profile. 97 437 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0350 Lele-ChrLele52 2063062 2067736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0350 71 444 Miscellaneous Gene Families AT1G77480 29.426 2.73e-33 130
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0350 52 2063062 2067736 Lele53g0166 53 1385059 1387746 CCT
Lele52g0350 52 2063062 2067736 Lele54g0167 54 1439657 1443733 CCT
Lele52g0350 52 2063062 2067736 Lele55g1317 55 19612602 19615264 CCT
Lele52g0350 52 2063062 2067736 Lele56g1267 56 15972295 15978901 CCT
Lele53g0174 53 1457521 1458461 Lele52g0350 52 2063062 2067736 CCT
Lele55g1310 55 19540104 19541044 Lele52g0350 52 2063062 2067736 CCT
Lele56g1261 56 15910740 15912010 Lele52g0350 52 2063062 2067736 CCT
Lele52g0350 52 2063062 2067736 Lele52g0350 52 2063062 2067736 ECH
Lele49g0326 49 1925146 1929974 Lele52g0350 52 2063062 2067736 hybridization
Lele50g0343 50 1978306 1982916 Lele52g0350 52 2063062 2067736 hybridization