LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele52g0339	ATGAATACAGTCGCCGCCAGAAGGGATATGGACCGGATTAAGGGTCCCTGGAGCCCCGAAGAGGATGAGGCCTTACAGAAGCTCGTCGAGAAGCATGGCCCCCGGAATTGGTCCCTGATCAGCAAGTCCATTCCCGGCCGATCCGGTAAGTCTTGCAGGCTTCGCTGGTGCAATCAGCTCTCCCCTCAGGTCGAGCACCGAGCTTTCACGCCCGAAGAGGATGACACGATAATCAGGGCTCATGCCCGTTTCGGTAATAAATGGGCCACCATCGCTCGCCTGCTCTCCGGCCGAACCGATAACGCCATCAAGAACCACTGGAACTCTACCTTGAAGCGCAAGTGTGCATCCATGATGATCGATGACGCCGGCGCTGTTGGTGGATTCGATGGCAGTTTCAGCCCGCAGCCGCTTAAGAGGTCGGTCAGTGCCGGCGCCGCTGTACCCGTGTCCACTGGGCTATGCATGAACCCGCCCACGCCGGGTAGCCCGTCTGGATCGGATATGAGCGAGTCTAGTGTCCCCGTTGCGTCTTCTTCTCAAGTCTATCGCCCTGTCCCGAGAACCGGCGGGGTTCTACCTCCCGTAGAAACGACGTCATCTTCCAATGATCCCCCCACGTCATTATCCCTGTCTCTCCCGGGCGTAGACTCCTCGGAAGTCTCTAATCGGCCTGCAGACCCAAAACATACTGCACCACCGGCCAACAGTATGCGCTTGTTATCCGTAATGGCGCCGACGCCCGCTCCGGCTCTCCCACCCGCCCCAACTTCGGCTCTGGCATCTTCTTCGATGTCGGTGCCGCAACAGGTTCATTTGGGTAGGGATGATCGAAGTGGCGAGAGGGGTCCGGATCAGAATGGGTTGTTAGGATTCAAGTTCAGTGCAGAGTTGCTAGCAGTGATGCAAGACATGATAAGGAAGGAGGTGAGGAGTTATATGGCGGGGTTGGAGCAGCCGAATGGGGTGTGTTTTGAGGCAGCTGATGGATTTCGAAACGCTTCAGTGAAGCGTATTGGAATTAGCAGGATCGATTCATGA	1041	0.5677	MNTVAARRDMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMIDDAGAVGGFDGSFSPQPLKRSVSAGAAVPVSTGLCMNPPTPGSPSGSDMSESSVPVASSSQVYRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRPADPKHTAPPANSMRLLSVMAPTPAPALPPAPTSALASSSMSVPQQVHLGRDDRSGERGPDQNGLLGFKFSAELLAVMQDMIRKEVRSYMAGLEQPNGVCFEAADGFRNASVKRIGISRIDS	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele52g0339	346	Gene3D	-	13	65	-	-
	Lele52g0339	346	ProSiteProfiles	Myb-like domain profile.	9	60	IPR001005	-
	Lele52g0339	346	PANTHER	MYB PROTEIN-RELATED	14	212	-	-
	Lele52g0339	346	SMART	sant	65	113	IPR001005	-
	Lele52g0339	346	SMART	sant	13	62	IPR001005	-
	Lele52g0339	346	CDD	SANT	68	111	IPR001005	-
	Lele52g0339	346	Pfam	Myb-like DNA-binding domain	68	110	IPR001005	-
	Lele52g0339	346	Pfam	Myb-like DNA-binding domain	14	60	IPR001005	-
	Lele52g0339	346	FunFam	Transcription factor MYB44	68	114	-	-
	Lele52g0339	346	SUPERFAMILY	Homeodomain-like	11	107	IPR009057	-
	Lele52g0339	346	MobiDBLite	consensus disorder prediction	153	288	-	-
	Lele52g0339	346	MobiDBLite	consensus disorder prediction	194	219	-	-
	Lele52g0339	346	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	115	IPR017930	-
	Lele52g0339	346	MobiDBLite	consensus disorder prediction	156	185	-	-
	Lele52g0339	346	FunFam	MYB transcription factor	14	65	-	-
	Lele52g0339	346	ProSiteProfiles	Myb-like domain profile.	61	111	IPR001005	-
	Lele52g0339	346	Gene3D	-	67	123	-	-
	Lele52g0339	346	CDD	SANT	16	58	IPR001005	-
	Lele52g0339	346	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	64	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele52g0339	Lele-ChrLele52	1993830	1994870	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele52g0339	6	345	MYB Transcription Factor Family	AT4G37260	48.883	1.29e-101	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele52g0339		Myb_DNA-binding	1.2e-17	CL0123