Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0328 ATGATGGGTTACAGGAACGATAGCTTCGCGGCCAAAATGGATGATAATGTAGTTCAGGAAGCTGCGTCTGGCCTGGAGAGCGTGGAGAAGCTCATCAGGTTGCTTTCTCAGAGTCAGCAACAATTCCAATCTTCTTCTTCTTCCGCTTCAAAGTCTTCCGTGGAAATCGAGATGGACTGTAAAGCCGTCGCGGACGTCGCCGTTTCCAAGTTCAAGAAGGTGATTTCTCTTCTGGGTCGAACCAGAACCGGTCATGCTCGATTTAGAAGAGCCCCTTTGCCGCCGTCTCCCCCTCCTCCATACGTTAATCAAAACCCCGAGCCGCAACCTTCTGAACCCAAAGTTTATTATGCGACGCCGTTGCAGCAGATCCCACCGGCCCTTCTTCAACACCAAAATCTCGGCGAACAACATCCCCTGATCCCCAAAAATGGGGGGATTGATAGGAAGGACTCGTTCAAGACCATTAATTTCTCGTATTCCTCCGCCGCGACGTCGTTTATGTCGTCTCGTACTGGCGATACTGATAGTAAACAACCGTCCTCGTCTTCGCCGGCGACCGCTTTTCAGATCACGAATCTGTCTCAGGTCTCCTCAGCGGGAAAGCCTCCTCTTTCTTCTTCGCTGAAGAGAAAGTGCAGCTCCGAGAACGTGGGTTCCGGCAAGTGCGGCAGTTCCTCTAGTCGTTGCCATTGTTCTAAAAAGAGGAAAATGAGGTTGAAGAGGGTAGTGAGGGTGCCCGCAATAAGCTTGAAGATGGCCGATATTCCACCTGATGATTATTCATGGAGGAAGTACGGACAAAAACCCATTAAAGGATCCCCTTATCCTAGAGGATACTACAAGTGCAGTAGCGTAAGAGGTTGTCCAGCACGCAAACACGTAGAGCGAGCTCTGGACGATCCATCGATGTTAGTAGTCACATATGAAGGCGATCATAATCACTCGCTCTCTGCGACCGATTCAACGAATCTCATACTGGAATCCTCATAG 993 0.4995 MMGYRNDSFAAKMDDNVVQEAASGLESVEKLIRLLSQSQQQFQSSSSSASKSSVEIEMDCKAVADVAVSKFKKVISLLGRTRTGHARFRRAPLPPSPPPPYVNQNPEPQPSEPKVYYATPLQQIPPALLQHQNLGEQHPLIPKNGGIDRKDSFKTINFSYSSAATSFMSSRTGDTDSKQPSSSSPATAFQITNLSQVSSAGKPPLSSSLKRKCSSENVGSGKCGSSSSRCHCSKKRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGDHNHSLSATDSTNLILESS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0328 330 MobiDBLite consensus disorder prediction 86 112 - -
Lele52g0328 330 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 17 322 IPR044810 GO:0003700
Lele52g0328 330 SUPERFAMILY WRKY DNA-binding domain 254 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele52g0328 330 Pfam WRKY DNA -binding domain 259 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele52g0328 330 MobiDBLite consensus disorder prediction 167 230 - -
Lele52g0328 330 MobiDBLite consensus disorder prediction 91 107 - -
Lele52g0328 330 FunFam WRKY transcription factor 65 241 318 - -
Lele52g0328 330 Pfam Plant zinc cluster domain 210 255 IPR018872 -
Lele52g0328 330 Gene3D WRKY domain 244 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele52g0328 330 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele52g0328 330 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele52g0328 330 MobiDBLite consensus disorder prediction 167 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0328 Lele-ChrLele52 1932011 1933361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0328 12 318 WRKY Transcription Factor Family AT2G24570 45.483 1.15e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele52g0328 WRKY 8.2e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0328 52 1932011 1933361 Lele53g0146 53 1199051 1200025 CCT
Lele52g0328 52 1932011 1933361 Lele54g0147 54 1260298 1261275 CCT
Lele52g0328 52 1932011 1933361 Lele55g1340 55 19834094 19835062 CCT
Lele52g0328 52 1932011 1933361 Lele56g1289 56 16140560 16141534 CCT
Lele52g0328 52 1932011 1933361 Lele52g0328 52 1932011 1933361 ECH
Lele49g0303 49 1784960 1786803 Lele52g0328 52 1932011 1933361 hybridization
Lele50g0318 50 1853600 1855441 Lele52g0328 52 1932011 1933361 hybridization