LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele52g0319	ATGGACGACATGGCTGCCTACTACACACAATCCCAACCCTCGGCTCATCATACTTTTCCATATTATCAACATCCTCATCCATCGTCGCTTGCAGTGGTGCCACCACCACCTGGTGCGGCCCCTCCCGGCCCCCACCACCTTCCTTCGCCGTATGGGTCCTACCAGCAACCCCTGTTTGCGTCTTATGGACCTCCTAATCCTCTTCAGTATTCCGCCGACGAGGTTCGGACACTCTTCATCGCCGGCCTTCCCGAGGATGTGAAGCCTCGCGAAATCTACAATTTGTTTCGAGAGTTTACCGGTTACGAGTCATCACATCTTCGGAGCCCCACTGACTCGTCGCAGGCTTTTGCTTTTGCTGTATTTGCTAATCAGCAGTCTGCACTCATGGCAATGCATGCATTAAATGGGATGGTCTTTGACCTTGAAGAGGGGTCAACTCTATATATAGATTTAGCAAAATCCAACTCTAGGTCTAAGCGCACAAGAATAGATGATGAAATAGTTGGTTCAGATAAGAAGGCTAGAGGATCTTCTTTTCCCAGAGCCACTCCTGATTCCGGTGTTGGCAGCATACACATGCCTGGAATGGGTAATTCTGCTTACAACTCAAACACGTATGGTTATCCATCTGCACAAAGCCAATGGTATGTTGATGGTAAAGCTTTTAATGACAGTGCAGCAACAAATTTGAATAACTCCTCACGCATTCCACAAAATGTGACCCCATGTCCAACTTTATTTGTGGCTAACCTGGGGCCATCTTGTACCGAACAAGAGCTAATGCAAGTATTTTCCAGATGTCCTGGATTTTTGAAACTGAAGATGCAGAGCACGTATGGAGCTCCCGTTGCATTTGTTGATTTTCAGGATATTGCCAGTTCAACTGGAGCTCTAAACAGTCTACAAGGCACCGTTCTTTACTCCTCAACAGCTGGCGAGGGAATGCGGTTAGCATATGCAAAATCACGGATGGGTATGCGGAAGAAGCCCAAGTAA	999	0.4745	MDDMAAYYTQSQPSAHHTFPYYQHPHPSSLAVVPPPPGAAPPGPHHLPSPYGSYQQPLFASYGPPNPLQYSADEVRTLFIAGLPEDVKPREIYNLFREFTGYESSHLRSPTDSSQAFAFAVFANQQSALMAMHALNGMVFDLEEGSTLYIDLAKSNSRSKRTRIDDEIVGSDKKARGSSFPRATPDSGVGSIHMPGMGNSAYNSNTYGYPSAQSQWYVDGKAFNDSAATNLNNSSRIPQNVTPCPTLFVANLGPSCTEQELMQVFSRCPGFLKLKMQSTYGAPVAFVDFQDIASSTGALNSLQGTVLYSSTAGEGMRLAYAKSRMGMRKKPK	332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele52g0319	332	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	78	141	IPR000504	GO:0003723
	Lele52g0319	332	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	247	310	IPR000504	GO:0003723
	Lele52g0319	332	Gene3D	-	72	165	IPR012677	-
	Lele52g0319	332	MobiDBLite	consensus disorder prediction	171	190	-	-
	Lele52g0319	332	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	245	323	IPR000504	GO:0003723
	Lele52g0319	332	PANTHER	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	215	323	-	-
	Lele52g0319	332	FunFam	RNA-binding protein with multiple splicing	237	328	-	-
	Lele52g0319	332	SUPERFAMILY	RNA-binding domain, RBD	75	309	IPR035979	GO:0003676
	Lele52g0319	332	FunFam	RNA-binding protein with multiple splicing 2	73	163	-	-
	Lele52g0319	332	SMART	rrm1_1	246	315	IPR000504	GO:0003723
	Lele52g0319	332	SMART	rrm1_1	77	151	IPR000504	GO:0003723
	Lele52g0319	332	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	76	155	IPR000504	GO:0003723
	Lele52g0319	332	Gene3D	-	238	331	IPR012677	-
	Lele52g0319	332	CDD	RRM_scw1_like	243	322	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele52g0319	Lele-ChrLele52	1886069	1890511	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele52g0319	62	309	Eukaryotic Initiation Factors Gene Family	AT4G34110	23.129	2.38e-06	47.4

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele52g0319	52	1886069	1890511	Lele53g0143	53	1168762	1169217	CCT
	Lele52g0319	52	1886069	1890511	Lele54g0143	54	1233061	1233516	CCT
	Lele52g0319	52	1886069	1890511	Lele55g1345	55	19862591	19863046	CCT
	Lele52g0319	52	1886069	1890511	Lele56g1292	56	16170211	16170672	CCT
	Lele52g0319	52	1886069	1890511	Lele52g0319	52	1886069	1890511	ECH
	Lele49g0295	49	1749149	1753125	Lele52g0319	52	1886069	1890511	hybridization
	Lele50g0309	50	1812410	1818960	Lele52g0319	52	1886069	1890511	hybridization