Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0304 ATGAACCATCAAGGTCAATACAATTCTAATGAAAGCATCCAAAGTGCAGCCAACCATTGGGAAGCCCTGGGAGCTGTGTCCTCATCAAGTTCTCGTACCGGAAGCATTCAAAGTTCCCCAAATAGTCTTAATGGGCCGAATGTTCTCCCTGATCAAGAGCATCTTAATATTGTTCAAAGCAATGATCATGGTGCGGGTGTTGTCCATCGTAACCTTGACTTAAATGCAGAATATGTGGTTAATGATCGTTACCCCAACAATCAGAATGCGTCAGCAGGTTTAAGCCTACATCCATTTGAACCTGATGCACCAGACAATCAGAACGGCAGTAATTTATCTGATCTAATGGCAATTGATAGTGGAAGATCCTATGTAGTAGATGAAGAAGGAGTAGATAAGAGCTTAGTGAACATGTATTATTTGTCCTCCAATAGATCTCTTGAACATGCTCCTAGAGAACTGTTAAATGGTGAAACTTCTAGATCAGCTGTGCAAGCTAGGATCCCCATATCACAGTCTGCTACCGTCCAAGTCAATACCAGTAACAGATTGAACATAGTAGCTCCTTATATTGGTGCTTCAAATATCCACCAAGAACAGATTGATGCTGAATCTGGTTATGAGACTATAAGACCAGTTTCTAACATGCAACAATTGAATGAAGCTAGGCATGGTTCTGCTAATAGTTCTCTATTTTCATTTGAGACTGGAATTGATCATGGTATTACCTGGCCATTTTATGACATGCTACCCTTCAGTCACACTAGACAAATCGGACTCTTTCACAGCAATAATCAGACAGATGCTAGTCCACCAGCCTTTGTGCCATCCAGCAATTTGTTGATGGGACATGCAAGGAACTTTCATGCTCTTTTCCCCAGTCAAACGCCTCAATATTACCAACAAGACCATCCTCTTTTCTTTAGCCAAACACAAGCTTCAGTTGGGGGAATTCTCTATGGGCAGATATTTGTGCAATTTCCTGATTTTCATGATATCCTGCTGCCTGCCCCTTGGGTTAATGTTTTGGGGCCAATACTTGTTCGACCTCCATTTTCACCTGTTTATACCATGCCAGGAGGCGGAAACCCTGACAACATTCCAAGAACTATCGTGCTTGGCTCTCAAACTGGAATGGGAGCTCAGTCACCTTATCTAGCAAACTTGAGTTTTGACCTTGGAACTGCTAACTTTCTTGGAAATTTTGCTTCCCCTTCCCATTATGGTCCTTTTACAGATAGTCATTTATTGAATGCCCCTACAGGTGTCCCTTGGTTCAATGCTTTCGAACAGCATATTCCAACGTTATCTGGAGTTGGGAACCCGTCTCCAGCCCTGCCTATTGGTTTCCCAGTGCCAAGTATAAATAACCAACTAGGTTTAAACCCTCCAGCAATCTCTCAAGAAAGGGACTTGGCTATTGTAATTACTGGTGCTGGATTTCAGAACCAGTTAAGAATGTCGCAAAGATTTGAGAATCAATCTAATCTTAATACTGGACCTCCTTCTACTAATGAAGCTAGAAACAATCCGTTAACTGAGGTGAATAGGCAACCTGTACCTGGATTGAGTGAAGAATATATCATGGCACACCTGAGGCTTGAAGAGTTCCAATCCCCCACAGAGGCAACTCCAGAAGATGTTGAGTCCTGTTGCATTTGTCAGGAGAACTATGCTGATGGGGAGGACGTTGGGGTGCTGGATTGCGGCCACAAGCTTCACTTTGATTGTGCCAAAAAATGGCTGCGCACCAAGAACACCTGCCCATTCTGCGTACGGACAGGACTTGCTGTGTGA 1797 0.4318 MNHQGQYNSNESIQSAANHWEALGAVSSSSSRTGSIQSSPNSLNGPNVLPDQEHLNIVQSNDHGAGVVHRNLDLNAEYVVNDRYPNNQNASAGLSLHPFEPDAPDNQNGSNLSDLMAIDSGRSYVVDEEGVDKSLVNMYYLSSNRSLEHAPRELLNGETSRSAVQARIPISQSATVQVNTSNRLNIVAPYIGASNIHQEQIDAESGYETIRPVSNMQQLNEARHGSANSSLFSFETGIDHGITWPFYDMLPFSHTRQIGLFHSNNQTDASPPAFVPSSNLLMGHARNFHALFPSQTPQYYQQDHPLFFSQTQASVGGILYGQIFVQFPDFHDILLPAPWVNVLGPILVRPPFSPVYTMPGGGNPDNIPRTIVLGSQTGMGAQSPYLANLSFDLGTANFLGNFASPSHYGPFTDSHLLNAPTGVPWFNAFEQHIPTLSGVGNPSPALPIGFPVPSINNQLGLNPPAISQERDLAIVITGAGFQNQLRMSQRFENQSNLNTGPPSTNEARNNPLTEVNRQPVPGLSEEYIMAHLRLEEFQSPTEATPEDVESCCICQENYADGEDVGVLDCGHKLHFDCAKKWLRTKNTCPFCVRTGLAV 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0304 598 CDD RING-H2_TTC3 550 591 - -
Lele52g0304 598 MobiDBLite consensus disorder prediction 493 517 - -
Lele52g0304 598 MobiDBLite consensus disorder prediction 493 518 - -
Lele52g0304 598 MobiDBLite consensus disorder prediction 24 50 - -
Lele52g0304 598 SUPERFAMILY RING/U-box 550 592 - -
Lele52g0304 598 ProSiteProfiles Zinc finger RING-type profile. 551 591 IPR001841 -
Lele52g0304 598 MobiDBLite consensus disorder prediction 89 110 - -
Lele52g0304 598 Pfam Ring finger domain 550 591 IPR001841 -
Lele52g0304 598 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 28 595 IPR045191 GO:0061630
Lele52g0304 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 528 595 IPR013083 -
Lele52g0304 598 SMART ring_2 551 591 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0304 Lele-ChrLele52 1795225 1799290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0304 522 598 C3H Transcription Factor Family AT2G15530 41.250 1.44e-17 84.7