Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0303 ATGGTTCTCCTGATCAGTTTCGGTTTACCTTTTGGGGAGAACCACGAGAGTCAAAAGGCTGCACAAGAAGACGTTGGATTGAAAATGAAGAGCCCGTCCGTCCTCATCTGCTTATCGCCGTTGGATCTTACATCGAAGGCCGGGGAACAAATATTGAAGGGTCTCGCCCTCCCAATCAAATCATATCTAATCACTAAGCGAGCAAGGAAGAGAAGAAGAGTCTTCTGAATGGGAGATATGTATCGCTATGATAATACTGAGAATCATAATTTCCCTGCGTCTTCAACCTCATCTTCACCTCAAGACGAAATCTCGCTTTTTCTGCGTCAGATTCTTCTTCGTTCATCCTCCTCGTCAGCATCATCGTCGCTGCTTGTGACCCACCCGGCTAACAACGCCCACACCTCGGTGGCTGGACTCTGCAGTTCCCACGCTACGCTGGAGAAGAATGCTCACCTTTCCCACCGATCATCACTTTTCCGAGATGGGATCTCCGTCTTTGATTCCTCCATCGGAGTAAGCGCTCCAAACGATGCTTTTCTTTCCTCTTCGGGGACTTATACGTTGGCCAACATGAAGGATAGTCCTGCTGTAAACTTGCCTTCGTCATCTTTCGGAGTAAGTGAGAATGAGTTCGATGAGTATGACTGCGAGAGTGAGGAGGGGGTCGAAGCATTGGTGGAACAGCAGCCGGTAAAGTCAGTTCCTCCGAGGAGTTCATCAAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGAAGCAGGATCAACGAAAAAATGAAGGCATTGCAAAATCTGATTCCAAATTCAAACAAGACAGACAAGGCTTCGATGCTGGATGAAGCTATTGAATACCTGAAACAACTTCAGCTCCAAGTACAGATGCTGTCGATGAGAAATGGTTTGAGTTTGCCTCCTATGTGCTTTTCTGAAGACTTGCAGGCTCAGCAATTTTGTCAGATGAGATCTGAACTCAGTGAAGAAAACAGGTCTTTGCCTTTAAACATGGCAACTACTCTGCCGTTGACCCAAGATAACCTCTTGCAATATGAGTCCATGTCCAATCTACCTGACAAACTGAATACACTGGACCAACCATTAGTGCCCTCACCATCGTATACAATCAACCCAGAAACTTCTTTTGGGTTAGAATCCCCAATTCTGCCGCATATAAGATCCTTTCCACAGAAAAGAACTTCTGAGCAGGCGCGTAGCAATGAGATATTGCGGCGCCAGCCATTAAATGCGAGCCATTCAGATACCAATCCTTTATGTGGTTCTCAAGTATCGCACGCCTTTGATATGCAAAAGCCCGAGCAGAAGGACAGGGTCTTTGAAACTGGCAGTGCGGAAAAAGATCAATTGGCATCGATCCTAAGAAATAGCGTAAACAACGTTACTATAACGTCGCGGTTTCGGAGATTGCGGGCGGAAGAAAGTATATGCGAAGACGACATCAAGGCAGAAAAAAAAAAAAACTAG 1497 0.4589 MVLLISFGLPFGENHESQKAAQEDVGLKMKSPSVLICLSPLDLTSKAGEQILKGLALPIKSYLITKRARKRRRVFXMGDMYRYDNTENHNFPASSTSSSPQDEISLFLRQILLRSSSSSASSSLLVTHPANNAHTSVAGLCSSHATLEKNAHLSHRSSLFRDGISVFDSSIGVSAPNDAFLSSSGTYTLANMKDSPAVNLPSSSFGVSENEFDEYDCESEEGVEALVEQQPVKSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLPPMCFSEDLQAQQFCQMRSELSEENRSLPLNMATTLPLTQDNLLQYESMSNLPDKLNTLDQPLVPSPSYTINPETSFGLESPILPHIRSFPQKRTSEQARSNEILRRQPLNASHSDTNPLCGSQVSHAFDMQKPEQKDRVFETGSAEKDQLASILRNSVNNVTITSRFRRLRAEESICEDDIKAEKKKN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0303 498 MobiDBLite consensus disorder prediction 231 251 - -
Lele52g0303 498 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 305 IPR036638 GO:0046983
Lele52g0303 498 SMART finulus 251 300 IPR011598 GO:0046983
Lele52g0303 498 FunFam Basic helix-loop-helix transcription factor 240 303 - -
Lele52g0303 498 Coils Coil 284 304 - -
Lele52g0303 498 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 294 IPR011598 GO:0046983
Lele52g0303 498 CDD bHLH_AtPIF_like 245 307 - -
Lele52g0303 498 Pfam Helix-loop-helix DNA-binding domain 249 295 IPR011598 GO:0046983
Lele52g0303 498 Gene3D - 240 304 IPR036638 GO:0046983
Lele52g0303 498 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 87 421 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0303 Lele-ChrLele52 1788860 1794112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0303 66 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 40.741 8.06e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele52g0303 HLH 8.3e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0303 52 1788860 1794112 Lele53g0135 53 1063536 1065588 CCT
Lele52g0303 52 1788860 1794112 Lele55g1357 55 19974111 19976189 CCT
Lele52g0303 52 1788860 1794112 Lele52g0303 52 1788860 1794112 ECH
Lele49g0284 49 1674116 1676484 Lele52g0303 52 1788860 1794112 hybridization
Lele50g0295 50 1719608 1729525 Lele52g0303 52 1788860 1794112 hybridization