Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0302 ATGCTCTCGTCGCCAAGCGCCGCGAAGAAGCCCGAGGCTTCATTGTGGACGATGACGGTCTTAGAGTTTGCACCGGATGAGACTGATAGCATTGTGGGATTTGTTTATTGTGCAGGTCATGTGAGGATGTTGTCGAATCAATTCACAGCTCTCTTTGTGCAAGAAGAGATGAGGTGTGGACAAGTGCCGTTAGAGAAATATATCATCACCAAGACATTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAACTCAACCGCATGTTCTTGTGGCACAAAGAATGAAGCAAAAGGGCTACTCCACGGGTTGCTCTGTTGGTGATGCAATCCCCTACATCATTTGCTATGAGCAGGGCAGTAATTCAAGCAGTGGAACAAGTATTGCTCAACGTGCTAGACATCCTGAGGAACTGAAACAAGAACAAGGAAAATGGATGATTGACATTGATTATTACCTGTCACAACAGCTTCATCCGGTTGTATCACGTCTGTGTGCATCAATTCAGGGCACGAGTCCTGAAAGACTGGCTGATTGTTTAGGGCTTGATGCATCAAAAGTAGAACCGCTTTCCTTCTTTTCAAACAAGTCAAGTGAAGCCTTCAATGGTGATCCTTCAAATTCACTCTTGTTTGCTGCTGATGACAACGAGAGTTCAGATTACTATTGTTTCAAGGATGGGAGCCGTTGGTTTTGTCATGTCCTAGCTGCTCTGGTCAAAAGGCAAGCAGATAAGTTTATTTCAATGTACTACAGAGGCTTGTTAATGTGTGACGATGAAACTTGCGAGTATTCAACACGAAGTATCACCCTTCGGCTGTTTGGTGATTCTGAAAGAGGAACTGTTTGTCCAAATTACCCTCGCTGCAACGGGCGTCTTCTAAGACAGACGGAGGTTAAATCTAGGATACCACCTGAGAAAGAGTTGTCGAAAATTAGGCCAATGGTTGATCTGGCAGCATCAGCTATACAGACGACTCGGGATCGGTGTGCCTTTGGGTGGGTACAGATGCAGGAATAG 1020 0.4529 MLSSPSAAKKPEASLWTMTVLEFAPDETDSIVGFVYCAGHVRMLSNQFTALFVQEEMRCGQVPLEKYIITKTLTKPPEAYPDAKTQPHVLVAQRMKQKGYSTGCSVGDAIPYIICYEQGSNSSSGTSIAQRARHPEELKQEQGKWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKVEPLSFFSNKSSEAFNGDPSNSLLFAADDNESSDYYCFKDGSRWFCHVLAALVKRQADKFISMYYRGLLMCDDETCEYSTRSITLRLFGDSERGTVCPNYPRCNGRLLRQTEVKSRIPPEKELSKIRPMVDLAASAIQTTRDRCAFGWVQMQE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0302 339 FunFam DNA polymerase 39 197 - -
Lele52g0302 339 Gene3D - 33 181 IPR042087 -
Lele52g0302 339 Pfam DNA polymerase family B 53 167 IPR006134 GO:0000166|GO:0003677
Lele52g0302 339 Pfam DNA Polymerase alpha zinc finger 233 297 IPR015088 GO:0003887|GO:0006260
Lele52g0302 339 Gene3D DNA Polymerase alpha, zinc finger 185 301 IPR038256 -
Lele52g0302 339 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 233 298 - -
Lele52g0302 339 SUPERFAMILY DNA/RNA polymerases 54 182 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0302 Lele-ChrLele52 1784702 1787710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0302 37 339 Core DNA Replication Machinery Family AT5G67100 45.288 1.69e-100 322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0302 52 1784702 1787710 Lele52g0302 52 1784702 1787710 ECH
Lele49g0283 49 1660076 1671134 Lele52g0302 52 1784702 1787710 hybridization
Lele50g0294 50 1716034 1718224 Lele52g0302 52 1784702 1787710 hybridization