Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0297 ATGGAGTGGGATCGAGGCGCGTCTCTCGGTACCGGAACCTTTGCTTCTGTTCATTTGGCCATTCCTAGAGGTGTTTCTGCTCAATTTTCATCTCCTGCAGCCGTCAAGTCCGCCTATGTCTTCTCTTATTCTTCCCTTGAGAACGAACAGTACGTGCTTCAACGCCTTGGACTCTGCCCCCAGATCATCAGGTGTTTTGGCCATGATTCTACTTTTGAAAACGGGGTCGAATTTTATAATTTGTTCCTGGAATATGCCGCCAGCGGTAGTCTTGCTGACCAGCTCAAAATTTGCGGTGGTCGCTTGCCGGAATCCAATGTCCGCCGATACACTAGTTCCATCGTCCAGGGGCTCAGACATATTCACGCCAACGGCTTCGTCCACTGTGATATAAAGCTTCCCAACATTCTTCTCTTTGGCAATGGCGACGTCAAGATTGCAGACTTTGGACTCGCTAAGAGGTCAGGGGGAAAACAGAGCGACGAAGAGACCAAGTATGAGCTCAGAGGAACTCCCATGTGTATGTCCCCGGAGTCAGTAAATGACGATGAGTATGAACCTCCGACTGATATATGGGCTCTCGGATGTGCTGTGCTGGAGATGTTCACCGGAAAACCCGCCTGGGATTTCAAGGATGGATCCAATATTTTCGCGCTGTTGATGCGGATTGGGGCAGGAGACGAATTGCCTGAAATCCCCGATGATTTATCAGAAGAGGGGAAGGATTTCCTGAGAAGGTGTCTGGTGAAGGATCCTAGAAAGAGATGGACGGCGGAGGAGCTCTTGGAGCATCCTTTTGTGGCCGACGAAACTGTTCCATTAGAGCGTGTCAAAGAACCGTCGACGTCGCCGAGAAGTCACTTCGATTTTCCAGATTGGGTCTCCAATACAGCAACCTCAGCTCTGAATTCGCCGGAATCTGATGACTGGTGTGAATGGAAATTCGAATCGTCGCGCCTGATCAGTACCTGTTCGCCGGAGGATAGGCTCCGGGAGTTGGCGACGAATCAGACGCCGAATTGGTCGGAATCTGACAGTTGGATTTGTGTTAGACGGGAATAG 1062 0.5047 MEWDRGASLGTGTFASVHLAIPRGVSAQFSSPAAVKSAYVFSYSSLENEQYVLQRLGLCPQIIRCFGHDSTFENGVEFYNLFLEYAASGSLADQLKICGGRLPESNVRRYTSSIVQGLRHIHANGFVHCDIKLPNILLFGNGDVKIADFGLAKRSGGKQSDEETKYELRGTPMCMSPESVNDDEYEPPTDIWALGCAVLEMFTGKPAWDFKDGSNIFALLMRIGAGDELPEIPDDLSEEGKDFLRRCLVKDPRKRWTAEELLEHPFVADETVPLERVKEPSTSPRSHFDFPDWVSNTATSALNSPESDDWCEWKFESSRLISTCSPEDRLRELATNQTPNWSESDSWICVRRE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0297 353 SUPERFAMILY Protein kinase-like (PK-like) 4 305 IPR011009 -
Lele52g0297 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lele52g0297 353 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 322 - -
Lele52g0297 353 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Lele52g0297 353 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Lele52g0297 353 SMART serkin_6 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0297 353 ProSiteProfiles Protein kinase domain profile. 3 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0297 353 Gene3D Transferase(Phosphotransferase) domain 1 93 306 - -
Lele52g0297 353 CDD STKc_MAPKKK 2 267 - -
Lele52g0297 353 Pfam Protein kinase domain 6 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0297 Lele-ChrLele52 1767022 1768083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0297 1 351 MAP Kinase Kinase Kinase AT5G67080 50.959 1.04e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele52g0297 Pkinase 6e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0297 52 1767022 1768083 Lele52g0297 52 1767022 1768083 ECH
Lele49g0279 49 1642312 1643373 Lele52g0297 52 1767022 1768083 hybridization
Lele50g0288 50 1699125 1700186 Lele52g0297 52 1767022 1768083 hybridization