Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0296 ATGTCTCTCTTGGACGTGGACATGCACAAAACTTCAGAGTATGAAAGCAGCGGCACGGACATGATTTCGATGATGATGCAAATGGAGAAGTTCCCAGCTGATCAGTTCTTTGATCCTTTCTTTAACAATACCTCTGATTACCCTGAAGCTGACGAGTCTGGTAATAGTATTGCTGCCACTACTCTCCCTGCATCCCTCAACCCTAACGAGCCTCCTGATTATGTCAACTGTAGTCCAATTATTCAACAACCCATGGCACCGCCATCGTTTCTTCAAACTCAATCTGACGATGTTCCTGCTACGAGGCCCAGAAATAAGTATAATCCCAATACATCGCGTGCTTTCCCCTGCGCTTCGGACAAGAGGAATTCAATGGCGGCCATGAGAGAGATGATATTCAGGATAGCGGTGATGCAACCGATTCAGATAGACCCAGATTCAGTGAAGCCGCCGAAGCGGAGGAATGTGAAGATTTCGAAGGATCCTCAGAGCGTGGCGGCGAGGAAAAGGAGGGAAAGGATAAGCGAGAGAATCAGAATTCTGCAGAGATTAGTTCCGGGTGGGACGAAAATGGACACGGCTTCCATGTTAGACGAAGCGATACAATACGTCAAGTTCTTAAAGAAGCAAGTGCAGACTCTGGAACAAGCAGGGGCTAGTAGGCCCGTAGGTGTTCCTTTTTCTGGGGCCTCAAGTAGTTCCTCTGTCAATGTCAATTATTCTGATTTCATCAAGGCAAGCCAACCAGCTTCTCGTATGGTGGGTTCTATGCAAATGCTAAGTTGA 786 0.472 MSLLDVDMHKTSEYESSGTDMISMMMQMEKFPADQFFDPFFNNTSDYPEADESGNSIAATTLPASLNPNEPPDYVNCSPIIQQPMAPPSFLQTQSDDVPATRPRNKYNPNTSRAFPCASDKRNSMAAMREMIFRIAVMQPIQIDPDSVKPPKRRNVKISKDPQSVAARKRRERISERIRILQRLVPGGTKMDTASMLDEAIQYVKFLKKQVQTLEQAGASRPVGVPFSGASSSSSVNVNYSDFIKASQPASRMVGSMQMLS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0296 261 Coils Coil 197 217 - -
Lele52g0296 261 Gene3D - 157 221 IPR036638 GO:0046983
Lele52g0296 261 FunFam BHLH transcription factor 161 223 - -
Lele52g0296 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 207 IPR011598 GO:0046983
Lele52g0296 261 MobiDBLite consensus disorder prediction 91 117 - -
Lele52g0296 261 Pfam Helix-loop-helix DNA-binding domain 167 207 IPR011598 GO:0046983
Lele52g0296 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 217 IPR036638 GO:0046983
Lele52g0296 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 259 IPR045843 GO:0003700|GO:0006355
Lele52g0296 261 SMART finulus 164 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0296 Lele-ChrLele52 1757686 1758471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0296 106 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 74.194 1.44e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele52g0296 HLH 2.5e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0296 52 1757686 1758471 Lele52g0296 52 1757686 1758471 ECH
Lele49g0278 49 1620923 1621708 Lele52g0296 52 1757686 1758471 hybridization
Lele50g0287 50 1687955 1688740 Lele52g0296 52 1757686 1758471 hybridization