Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0293 ATGGCTTCTACCTTAGCTTGCAGCTCTCTTAATCCCTCAACGACATCTTTCTCAAGAACCAATTTCTCAATTCTTACTTATAAAGAATTTTCATTGGATCTTCCACCCTCTGGAAGCAGAACAATTAAGCGTACGAAGAAACTGCTACCGATTCCAGCTGCAGTGGCAGAAGCACCCCCTGTTGCTTCACCGCCAACACAAACTGTAACTGAAAATCATGGGAATCGAACTCCTCGAAAGAAGATTCGGATACTCGTGGCAGGCGGTGGGATCGGTGGTTTGGTTTTGGCACTAGCTGCAAAGAGAAAAGGCTTTGAAGTTTTGGTGTTTGAGAAGGATATGAGTGCTATAAGGGGAGAGGGACAATACAGGGGTCCAATTCAGATACAGAGTAATGCATTAGCTGCTTTGGAAGCTATAGATTCGGAGGTTGCCGAAGAAGTTATGAGGGTCGGTTGTATAACGGGTGATAGAATCAATGGACTCGTTGACGGAGTTTCTGGTTCTTGGTACATCAAGTTCGATACATTCACTCCTGCAGCGGAACGTGGGCTTCCAGTCACAAGAGTTATAAGTCGAATGGCTTTACAAGAGATACTTGCACGTGCTGTTGGAGAAGATGCCATCATGAATTCCAGTAATGTTGTTAATTTTGTGGATGACGGAAACAAGGTAACAGTAGAGCTTGAGAATGGTCAGAAATATGATGGTGATCTATTGGTTGGCGCGGATGGTATATGGTCCAAGGTCAGGAAACAGTTATTTGGGCCAACAGAAGCAGTTTACTCTGGCTACACTTGTTACACTGGCATTGCAGATTTTATTCCTGCTGACATTGACTCTGTTGGGTATCGAGTATTCTTGGGACACAAACAATACTTTGTTTCTTCAGATGTTGGCGGGGGGAAGATGCAATGGTATGCATTTCACAAAGAACCACCTGGTGGTGTTGATAGCCCCCATGGAAAAAAGGAAAGGCTCCTTCATATATTTCAGGGCTGGTGTGATAATGTAATAGATCTATTACTTGCTACAGACGAAGAGGCAATTCTGCGACGGGACATATATGATAGGATACCGGTATTCACATGGGGAAAGGGCCGTGTGACCTTGCTTGGTGATTCTGTCCATGCCATGCAGCCAAATATGGGCCAAGGAGGATGCATGGCTATCGAGGACAGTTATCAGCTTGCGTGGGAGTTGGATAATGCATGGGAACAATGTATAAAATCAGGGTCTCCAATTGACATTGGTTCTTCCCTCAGGAGCTATGAGAGAGAAAGAGTACTACGAGTTGCTATTATTCATGGAATGGCAAGAATGGCAGCTCTTATGGCTTCCACCTATAAGGCATATATTGGTGTTGGTCTTGGCCCTTTAGAGTTTTTGACCAAGTTTCGAATACCACATCCTGGAAGAGTTGGAGGGAGGCTTGTGATTGACAAGGTTATGCCTTTAATGTTAAGTTGGGTCTTAGGTGGCAATAGCTCCAAACTTGAAGGGAGACCTGTATGTTGCAGACTCTCAGACAAAGCAAATGGCCAGTTACCCAAATGGTTTGAAGATGATGATGCACTTGAACGTGCTATTAACGGAGAGTGGCTTTTATTACCATGCGGGGATGAAGCGGGACTTTTGAAGCCTATATCGTTAAGTCAAGATGAGAACAAACCCTGCATAATTGGGAGCACCCCGCTAGAGGACCATCTAAGCAGTTCAATTGTAATACCTTCCCCACAGGTTTCTCAAACACATGCTCGAATTAACTACAAGGATGGTGCCTTCTTCTTGACTGATTTGCGCAGTGAACATGGAACCTGGATAGCTGACAATGAAGGAAAGCGGTATCGGGTGCCTCCAAATTATCCTGTTCGTGTCCGCCCGTCTGATGCTGTCGAATTTGGTTCTGATAAGGCTGCATTTCGTGTGAAGGTGACAAGGTCTGCTCCCAGATATTCTGAGCAAGGAACGAAGATTTTACTGGAACGATGA 1992 0.4483 MASTLACSSLNPSTTSFSRTNFSILTYKEFSLDLPPSGSRTIKRTKKLLPIPAAVAEAPPVASPPTQTVTENHGNRTPRKKIRILVAGGGIGGLVLALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDSEVAEEVMRVGCITGDRINGLVDGVSGSWYIKFDTFTPAAERGLPVTRVISRMALQEILARAVGEDAIMNSSNVVNFVDDGNKVTVELENGQKYDGDLLVGADGIWSKVRKQLFGPTEAVYSGYTCYTGIADFIPADIDSVGYRVFLGHKQYFVSSDVGGGKMQWYAFHKEPPGGVDSPHGKKERLLHIFQGWCDNVIDLLLATDEEAILRRDIYDRIPVFTWGKGRVTLLGDSVHAMQPNMGQGGCMAIEDSYQLAWELDNAWEQCIKSGSPIDIGSSLRSYERERVLRVAIIHGMARMAALMASTYKAYIGVGLGPLEFLTKFRIPHPGRVGGRLVIDKVMPLMLSWVLGGNSSKLEGRPVCCRLSDKANGQLPKWFEDDDALERAINGEWLLLPCGDEAGLLKPISLSQDENKPCIIGSTPLEDHLSSSIVIPSPQVSQTHARINYKDGAFFLTDLRSEHGTWIADNEGKRYRVPPNYPVRVRPSDAVEFGSDKAAFRVKVTRSAPRYSEQGTKILLER 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0293 663 Pfam FHA domain 561 635 IPR000253 GO:0005515
Lele52g0293 663 Pfam FAD binding domain 83 254 IPR002938 GO:0071949
Lele52g0293 663 Pfam FAD binding domain 363 403 IPR002938 GO:0071949
Lele52g0293 663 PIRSF Zeaxanthin_epoxidase 1 662 IPR017079 GO:0009507|GO:0009688|GO:0016020|GO:0052662
Lele52g0293 663 SUPERFAMILY SMAD/FHA domain 524 643 IPR008984 GO:0005515
Lele52g0293 663 ProSiteProfiles Forkhead-associated (FHA) domain profile. 559 613 IPR000253 GO:0005515
Lele52g0293 663 Gene3D - 540 646 - -
Lele52g0293 663 Gene3D - 83 454 IPR036188 -
Lele52g0293 663 MobiDBLite consensus disorder prediction 57 76 - -
Lele52g0293 663 CDD FHA 533 645 IPR000253 GO:0005515
Lele52g0293 663 SMART FHA_2 558 613 IPR000253 GO:0005515
Lele52g0293 663 SUPERFAMILY FAD/NAD(P)-binding domain 82 450 IPR036188 -
Lele52g0293 663 PANTHER - 67 533 - -
Lele52g0293 663 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 83 105 - -
Lele52g0293 663 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 366 381 - -
Lele52g0293 663 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 381 397 - -
Lele52g0293 663 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 236 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0293 Lele-ChrLele52 1736901 1742495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0293 84 425 Miscellaneous Gene Families AT5G05320 27.528 5.63e-19 87.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0293 52 1736901 1742495 Lele53g0127 53 1012653 1013852 CCT
Lele52g0293 52 1736901 1742495 Lele54g0126 54 1066125 1067330 CCT
Lele52g0293 52 1736901 1742495 Lele55g1364 55 20023075 20024283 CCT
Lele52g0293 52 1736901 1742495 Lele56g1307 56 16320722 16321927 CCT
Lele53g0132 53 1044426 1045595 Lele52g0293 52 1736901 1742495 CCT
Lele54g0132 54 1113410 1114477 Lele52g0293 52 1736901 1742495 CCT
Lele55g1360 55 19993681 19994742 Lele52g0293 52 1736901 1742495 CCT
Lele56g1303 56 16282964 16284025 Lele52g0293 52 1736901 1742495 CCT
Lele52g0293 52 1736901 1742495 Lele52g0293 52 1736901 1742495 ECH
Lele49g0274 49 1601326 1606700 Lele52g0293 52 1736901 1742495 hybridization
Lele50g0284 50 1665028 1670752 Lele52g0293 52 1736901 1742495 hybridization