Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0269 ATGCGTTGGTTACCTTCCCTTTCCTTTTCCCACTCTCACGCTCCCAAATCTTCCTCTGCCTCTTCTTCCCTTTCCACCTCCGACGTTGGCCACCACAAGAAGAAGTCCGCCGATGCCACCCGCGGTTCGGGTGGCGTTTGGCCTTTCGGTATCGGCAAAAAGACTAGCCATTCCAAGAAGCTCCGACCTATAGCCGACGTCGATGGCAAGTCCCCTCCCAGGGGGCATGATTCCTATGATGACGTCATTGTGCCTTTGGTTCAATCCCCGACCCCCCTTGATCGCCAGTTTAGTCGTTCCAATACAACTTCTTCCTTTTCCCCCTCCGTCGCGCCTCAACCCTTGCCCTTGCCGGACTCTGTACTTTCTCGCCAGAGAGACGCCGATTGCCCTTTGCCTTCCCCGAAAGATGTGCCAGGATCCAGCAGCGCCGCCAAAGGGGTCGTGGAGCGCGATCGAGCTGATGGCGTGATGGCTGGTGTCTCCTCTGTTTTTCAAATGCGGAGTGTGTTTGCTAGCCCCGGCGTAGGAAAGAATAAGGGGCAAGATGAAACAGGGTCATCAAGGATGGCGCGTCAGGATCTAAGTGGCAGTGAAAGTAATCGAGATAACTTTCGCATCAGCGTCTCAACTTGGAGTGCTCCAGTTAGTCCTCTGAGCAGTCCCTTGGTGAGCCCGAACAATGGAAGAAATAGTGATTTCGTTCAATATCATTACGTGGGTCCCCCGCCAAATCAATATTGGTCGGCACCAGAGATGGTCACTTCTGATGCATCAACAGGGACGACGCCACCTGCATTCTTTGATTTAACTGCATTATCAGCTGATACTTCTCCTCATCACAGTCCACGTGGCCGAAGTCCTAACCAAAATCTCAAAAGCCGAAGTGGAGCTACCTCACCAGTACGTCCCAGATTATCCCTCGAGACCTCAGTAGCTCGTCGTGATTTCAGTGCCCACTCTCTCAGTGTTCACCCCTTGCCATTGCCTCCTGGGGCACCCTTGCTTTCCCCTTCCCCTAAATTATCCCCAACTTTGCCAAAGTTAGAGTCTTCCCCAATGAAAAGCCAATGGCAGAAAGGCAAACTAATTGGGCGTGGTACATTTGGAAGTGTTTATGTTGCTACCAATAGAGAAACTGGTGCATTATGTGCGATGAAGGAGGTAGAAATATTTCCTGATGACCCCAAATCCGCTGAGTGCATAAAACAGTTAGAGCAGGAAATCAAAGTTCTTAGCCAGCTGAAACATACAAACATTGTGCAGTATTATGGCAGTGAAATCGTAAGCAATCTCCTTGTTGAAGACCGGTTTTATATTTATCTGGAATACGTCTATCCTGGGTCAATAAATAAATATGTACGGGAACATTGTGGTGCCATAACAGAATCTGTTGTTCGAAATTTCACTCGTCATATTCTCTCAGGCTTGGCTTACTTGCATAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGATTCTACCGGGGTTGTTAAGCTTGCTGACTTTGGGATGGCAAAGCACCTTACTGGACATGCAGCTGATCTTTCTTTGAAGGGAAGTCCATACTGGATGGCTCCTGAGCTTATGCTGGCAGTGATGCAAAAAGACAACAGCTCTGATCTAGCTTTAGCTGTTGACATTTGGAGTTTGGGTTGCACAATCATAGAAATGCTCACAGGGAAGCCTCCTTGGAGCGAATACGAGGGAGCTGCGGCTTTGTTTAAGGTTATGAAGGATACCCCTCCTATACCTGAAACATTGTCACCGGAAGGTAAAGACTTCCTGAGGTGCTGCTTTAAGAGAAATCCAGCAGAGCGGTCAACTGCTTCAGCTTTACTTGAACATCGGTTCTTGAAAAATGCACAACAGCTTGATGTTTCACATTCCATGCAGTCTCATAATGGAATAAATTTGATGATGGACAGAAGCGGCCATGTAACTTTTGACATAACATTGGTGTCAAGCGAAAGTACAAGGGCTTCTTCATCAGTCTGGAAGTTATGCTGCACGAGAATAGAAGCAGTTTTTGGTTGCTTTATATATTCATATCATGCCCGCAATTTTCTCATCTTTCCTTTAATTCGGTGCCCTATGGATGGCTTTTCTTGCTTTTTAATATTACTGCTTGATCTTCTGGATTTGATCGGGGCTTTTGGGGAAGCACCTATTTTGTTGGCTACCGCCATCACGTTTTCGATTGAATCAATGTTCTCCAAATCCATTTCTGCCTCCCATTGCCCAGTTTTATTTCTTCTGTTCATCTTCGATGATCTGCTAGGGTACAACTTATTCAATCTTGATAATGCTGAATCCCGCCAAGCGTCAGCTGCGAGCTTCTTTGCCATGGAAGCAGAAACGTTCTGA 2382 0.4706 MRWLPSLSFSHSHAPKSSSASSSLSTSDVGHHKKKSADATRGSGGVWPFGIGKKTSHSKKLRPIADVDGKSPPRGHDSYDDVIVPLVQSPTPLDRQFSRSNTTSSFSPSVAPQPLPLPDSVLSRQRDADCPLPSPKDVPGSSSAAKGVVERDRADGVMAGVSSVFQMRSVFASPGVGKNKGQDETGSSRMARQDLSGSESNRDNFRISVSTWSAPVSPLSSPLVSPNNGRNSDFVQYHYVGPPPNQYWSAPEMVTSDASTGTTPPAFFDLTALSADTSPHHSPRGRSPNQNLKSRSGATSPVRPRLSLETSVARRDFSAHSLSVHPLPLPPGAPLLSPSPKLSPTLPKLESSPMKSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEIFPDDPKSAECIKQLEQEIKVLSQLKHTNIVQYYGSEIVSNLLVEDRFYIYLEYVYPGSINKYVREHCGAITESVVRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSTGVVKLADFGMAKHLTGHAADLSLKGSPYWMAPELMLAVMQKDNSSDLALAVDIWSLGCTIIEMLTGKPPWSEYEGAAALFKVMKDTPPIPETLSPEGKDFLRCCFKRNPAERSTASALLEHRFLKNAQQLDVSHSMQSHNGINLMMDRSGHVTFDITLVSSESTRASSSVWKLCCTRIEAVFGCFIYSYHARNFLIFPLIRCPMDGFSCFLILLLDLLDLIGAFGEAPILLATAITFSIESMFSKSISASHCPVLFLLFIFDDLLGYNLFNLDNAESRQASAASFFAMEAETF 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0269 793 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 16 635 - -
Lele52g0269 793 MobiDBLite consensus disorder prediction 10 27 - -
Lele52g0269 793 MobiDBLite consensus disorder prediction 91 110 - -
Lele52g0269 793 MobiDBLite consensus disorder prediction 180 202 - -
Lele52g0269 793 ProSitePatterns Protein kinases ATP-binding region signature. 364 387 IPR017441 GO:0005524
Lele52g0269 793 FunFam Mitogen-activated protein kinase kinase kinase 5 355 663 - -
Lele52g0269 793 MobiDBLite consensus disorder prediction 1 151 - -
Lele52g0269 793 SMART serkin_6 358 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0269 793 MobiDBLite consensus disorder prediction 275 306 - -
Lele52g0269 793 MobiDBLite consensus disorder prediction 328 352 - -
Lele52g0269 793 SUPERFAMILY Protein kinase-like (PK-like) 348 666 IPR011009 -
Lele52g0269 793 ProSiteProfiles Protein kinase domain profile. 358 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0269 793 MobiDBLite consensus disorder prediction 59 77 - -
Lele52g0269 793 MobiDBLite consensus disorder prediction 173 202 - -
Lele52g0269 793 Gene3D Transferase(Phosphotransferase) domain 1 354 651 - -
Lele52g0269 793 Pfam Protein kinase domain 359 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0269 Lele-ChrLele52 1576715 1581907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0269 141 644 MAP Kinase Kinase Kinase AT5G66850 59.065 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele52g0269 Pkinase 1.1e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0251 49 1467069 1471569 Lele52g0269 52 1576715 1581907 hybridization
Lele50g0263 50 1537487 1542651 Lele52g0269 52 1576715 1581907 hybridization