Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0266 ATGGACTTGAGCTTAGATTTGAGTTTGTCTTTTGTTCCCAGACCCATTTCTGAGTTTCTTGGTGAGGTCTCTAAAATCGGAGATAGGCACGAGAAATTAGCGATGCTTGACGACTTTGTCAAGAGATTGGAGGATGAAATGAGGAAGATTGAAGCCTTCAAACGCGAGCTTCCACTCTGCATGTTGCTCGTAAACGATGCTATAACGAGGTTGAAGGAGGAGAAAGTACGGTTCGTGGAAGTGCTAGATCGACCTGAGATTGAAGAATTCATACCATTGAAAGCCAATTCTAGAGAAAACAGACAATTAGCTATGGAAAAGGAAAGCTATGACAAGAGGAACTGGATGACCTCTGCTCAACTGTGGAGCGCTGAAACCAAATTGGGAAGTGAAAATGATCGGTCTGTACCGGAGAACCTAATTCAGTCACGAAATCTGAAAAACAGAGGAGGGGCATTTATCCCCTTTAATGGAAATTTGGGTATGTCAAAGCCAGTAACGAAGGAAGATAAGGAACTTTCACAAGTTCCTAATCTTAGCTTGATGACTCCAGCGTCTGAACTGAATCTCAAGAATTCAAAAACTTTTAGCAGAAATTGTTCGGGTGCTTCTTTCCTTACAGGTCGGCTTAACGGACAAGTCCAACCACAACCTCAACATTTGCATCAAAATCAAAGAAAACAAAGGCGATGCTGGTCTCCGGAGCTTCACCGGCGATTTGTGGATGCGCTTCAACAACTAGGAGGAGCTCAAGTGGCCACTCCAAAACAGATTAGAGAATTAATGGAGGTGGAAGGCCTAACAAATGATGAAGTGAAAAGCCATTTGCAAAAATACAGACTTCATGTGAGAAGACTTCCATCTTCAACAATTAACCAAGGAAATGGCTTGTGGATGGTAGAAGATCAATGTGGAGAAAAGTCAAAAGTAAACTTATCGCAGTCTGGCTCTCCCCAAGGACCTCTCTTACTTGCAGGTTCTGCAAAGGGTCTATCGAGTTCTGGAGACGGCGAAGAAGATGAGAAATCAGATTGCCATAGTTGGAAAGGTGGCCTGCACCAGCAAGCAGAAGCTGATAATGTACCGTCCTAA 1092 0.4341 MDLSLDLSLSFVPRPISEFLGEVSKIGDRHEKLAMLDDFVKRLEDEMRKIEAFKRELPLCMLLVNDAITRLKEEKVRFVEVLDRPEIEEFIPLKANSRENRQLAMEKESYDKRNWMTSAQLWSAETKLGSENDRSVPENLIQSRNLKNRGGAFIPFNGNLGMSKPVTKEDKELSQVPNLSLMTPASELNLKNSKTFSRNCSGASFLTGRLNGQVQPQPQHLHQNQRKQRRCWSPELHRRFVDALQQLGGAQVATPKQIRELMEVEGLTNDEVKSHLQKYRLHVRRLPSSTINQGNGLWMVEDQCGEKSKVNLSQSGSPQGPLLLAGSAKGLSSSGDGEEDEKSDCHSWKGGLHQQAEADNVPS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0266 363 MobiDBLite consensus disorder prediction 334 348 - -
Lele52g0266 363 SUPERFAMILY Homeodomain-like 225 285 IPR009057 -
Lele52g0266 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 284 IPR017930 -
Lele52g0266 363 MobiDBLite consensus disorder prediction 309 363 - -
Lele52g0266 363 FunFam Myb family transcription factor 226 284 - -
Lele52g0266 363 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 227 282 IPR006447 GO:0003677
Lele52g0266 363 Coils Coil 36 56 - -
Lele52g0266 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 349 IPR044787 GO:0003700|GO:0006355
Lele52g0266 363 Gene3D - 226 283 - -
Lele52g0266 363 Pfam Myb-like DNA-binding domain 229 280 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0266 Lele-ChrLele52 1549683 1551274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0266 1 277 G2-like Transcription Factor Family AT4G37180 43.463 1.35e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele52g0266 Myb_DNA-binding 3.7e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0110 54 881742 889281 Lele52g0266 52 1549683 1551274 CCT
Lele55g1377 55 20207165 20208892 Lele52g0266 52 1549683 1551274 CCT
Lele56g1322 56 16492798 16503171 Lele52g0266 52 1549683 1551274 CCT
Lele49g0248 49 1444066 1445650 Lele52g0266 52 1549683 1551274 hybridization
Lele50g0261 50 1515896 1529110 Lele52g0266 52 1549683 1551274 hybridization