Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0226 ATGGAAGTGCTTCCGTGTTCTGGTGTTCAATATGCTGCAGAATCTGATGGCCCTCAACAGAGTTCAGTAACATCTTTTGTTTATGAGGGAGAACCTAATTGCTCTGAAAATGGTGAACGACTTGAGTTGGAGGATGGTCAACGTAATGACTCATTACTTAAAATGAAAGGCCCTCAGGTGGAAGGGCAGGGTGGAGTTCAAGAGGCAGTTGGCAAACTGTCGGTTAATCCAGATTGGCAGTGCAGTGGAGCTTCAAATTGTGAATGTCAAGCTGTAGACCAAAAGGAATCTTCTAGTTTGCATGCTTTTGATGAGGATGAGATAGATGAACCTTGCTTAATCTCAGAGAACCCTATTCCCTTTGTGGATACAATTGAAAGTGAATCACCAAACAACAGTAGGGATGGAGAGTTACCACTTGCTGAACCTAGTTGGCTTGAGGGGGATGAGTCTGTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGCATCAGATGTGCAAGGGCTGATTGGCCCTTATCAACTTTAAAAGCAAAACCTACGCATGGCCGGAAGAAATATTTTGTGATATTTTTTCCTCACACAAGGAATTATTCTTGGGCTGACATGATGCTTGTTTGTTCAATTAATGAGTTTCCTCAGCCTATCGCTTATAAGACCCATCAAGCAGGATTGAAAATGGTGAAAGATTTGTCTGTTGCCCGACGGTTTATAATGCAAAAGCTAGTCGTTGGGATGTTGAACATCATTGATCAATTTCACTTTGATGCTTTAATTGAAGCTGCCCGTGATGTGATGTTCTGGAAGGAGTTTGCGTTGGAGGCTTCCCAAAGTAATGGTTATTCTGATCTGGGAAGAATGCTTCAAAAGCTGCAAAATAGCATAATGCAGCGCTACATAAATGCTAACTGGTTACAACATTCTTTTCCCATTTGGATTGATCGATGCCAGAATGCAAGTAGTGCTGAATCGGTAGAACTGCTAAAGGAGGAATTGTTTGATTCTATATTGTGGAATGATATCGGCACTCTATGGGATGCTCCAGTGCAACCAATATTAGGTTCTGAGTGGAAAACGTGGAAGCATGAAGTGATGAAATTGTTTTTTACCTCTTCTTCATTATATAGTAGCAAAGACATGCAACAGCAGCAGACCTCCGATGGCCCCTTCCAAACAGGACTCCAAGTTTGTCGAAAAAGACCCAAGCTTGAAGTTCGTCGTGCAGACATACATGCTTCACAAGTAGAAACTAAGGGTTCAGATCACTCTATTGCACTTGAGACTGACTCGGGCTTCTTTAGTCATCAGGACATTGTGAATACATTAGCAGCTGGGACTTGTATACAGGAGGAACTTAGGGAGGCACCAATTCCAATTGATTCACCGAGTAATTTAGCGAACAAATGGAATAACCTTGTTGTTGAATCTGCTGCAGATTCTGAGTTCTTGCATACCAAAGCTATGGAATCAACACCTATCAATGAAATGGTTGGTCCCAAATCTATAGAACCTGGTAGTAAGAATCGACAATGTGTCGCTTACATAGAAGCCAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTTTACTGTTGTGTGCATTTGTCGACTCGGTTTTTAGGCAGCTCTGCTAGAGCAGAAAGACCTGTTTCAGTTGATGCTCCTATGTGTGAAGGCACAACTGTTCTTGGCACCAGATGCAAGCATCGAGCCCTTCCTGGCTCTTCATTCTGTAAGAAACACAGGCCCCATGCTGAAACAGACCACACTCCAAATTTACCCCCAACTTCCCTAAAGAGGAAGCATGAAGAAACTTACACTGGTTTGGAGAGCATGTTCTGCAAAGAAATTGTACTGGCAGATGCTGAAAGTCCTTTGCAAGTGGATCCAGTTTCAGCCATGGATGATGATACCTTCCATGGAAACAGTAACTTGAATGGGAAACCTATGCATTCCGGAAATGATCATAATGCAATGGAGGAACATCGCTGTATAGGCTCATCTCCCTTTGATGACAAGAACCCCTGTTTGGAAACTCCAAAGAGGTATTTCTTGTATTGTGAAAAGCACCTGCCAAGTTGGCTCAAACGGGCGCGAAATGGAAAGAGTAGAATAATTTCAAAAGAAGTGTTTGCAGAACTTTTGAGGGAATGCTTCTTACAGGAGCAGAAAGTAAATCTACATAAAGCATGTGAGCTTTTTTACAGGCTATTTAAAAGCATTTTATCCCTAAGAAACCCTGTTCCTAAAGAAGTTCAATTCCAGTGGGCTTTGACTGAAGCTTCTAAAGATACTAGTGTCAGAGAATTCTTTAAAAAGTTGGTTCATAGTGAAAAAGAGAGAATCAAAATGATCTGGGGATTCAACAATGACAAAGATGCGCCTTCGCTCATGGAAGAAATACCTCAGTTGCCATCCACCGTTAATGATAGCTTTGTTAATGAAAATGTCATTGAGTGTAAGATATGCTCTGCAGAATTTCCTGATGACCTAGCACTTGGCAGCCATTGGATGGAAAACCATAAAAAGGAATCACAGTGGCTATTTAGAGGTTATGCATGTGCTATTTGCCTGGATTCTTTTACCAACAAGAAAGTCTTGGAAAACCATGTCCAGGAGAGACACCGTGTGCAATTTGTTGAACAATGTATGCTTTTGCAGTGTATTCCTTGTGGTAGCCATTTTGGAAATACTGAACAACTATGGCTGCATGTTCTATCAGCTCATCCTGTTGATTTTAAGGCATCAAAAGCTCCCAAGCAGCAAACTTTGTCTACTGGTGAGGACTCTTCAATACAACTAGAAGCAAAGCAGGTAAACTCAGCCTCTTTGGAGAATAATTTGCAGAATTCAGGTGGTTCACGGAAGTTTATTTGTAGGTTTTGTGGGTTAAAGTTCGATTTACTACCTGACCTTGGTCGCCATCATCAAGCTGCTCATATGGGGCCTAATTTAGTTAGCAGCCGTCCCTCAAAAAAGGGAGTTCGTTATTATGCATATAGATTAAAATCTGGCAGACTTAGTCGTCCTAGATTCAAAAAAAGTTTGGTGTCAGCATCATATCGGATCAGAAGTAGAGCTAGTGCCAATTTAAAGAGACGCATTCAAGCAACAAAGTCGCTTGGCATTGGGGGAATAACTATCCAACCTCAAGTAACTGAGACAACAAATATTGCCGAGTTACCAGAATATCAATGCTCTGCTGTTGCCAAGATTTTGTTTTCTGAGATCCAAAAGACTAAGCCTCGGCCAAACAATCATGATATTATATCAATTTCTCGCTTTGCCTGCTGCAAAGTTGGCCTTCAAGCTGCACTGGAGGAGAAATTTGGAACTCTGCCTGAAAAGATGTATCTGAAGGCTGCAAAACTTTGCAGTGAACATAATATTCTAGTGAGTTGGCATCAAGAATGGCTTAATTGTCCTAGAGGTTGCAAGGCGTTGAAGGACCAACCTTTGCTTTCTGACTTAGCATCTCTTCCTAATGGTTTTGTAAGGCAAAAGGCTTTAAATTTGTCAGATCCTGCAGTAGACGAGTGGGAGGTGGATGAGTTTCATTACACCATCAATTCGCACCATTTAAAACCAGAATCCTTGCAAAAGTCTATAGTCTTATGTGATGACATAAGCTTTGGGAAGGAATCAGTTCCAGTGATTTGTGTAGTAGATCAAGGACTTCGAAATTCACTTCATATCTGTGGGTCTAATGAACATGATACGAATCTTTCTATGACATGGGAGAGCTTTACCTACATTACGAAGCCAATGCTTGATCAATCCCTGAATCTTGATTCAGAGAGTCTGCAATTGGGATGTTCCTGTTCATATTCTACTTGCAGTCCTGAAACTTGTGCTCATGTATACCTTTTTGATAATGACTATGAAGATGCAAGGGACATATTTGGAAAATCAATGCGTGGCAGATTCCCATATGATGAGAACGGTCGAATGATTTTGGAGGAAGGTTACCTAGTCTACGAATGCAACTATAGCTGCAGATGTAGTAAAACCTGTCCAAACAGAATTTTGCAAAATGGAGTTCGAGTTAAATTGGAAGTTTTTAAAACAGAGAAAAAGGGATGGGCTATAAGGGCTGGTGAGGCCATCCTACGGGGCACATTTGTGTGTGAGTATGTTGGAGAGGTTTTAAATGAGCAGGAGGCACATAACAGGCGCAAGAGGTACGGCATAGAAGGTTGCAGGTATTTCCTTGATATTGATGCTCATATTAATGATATGAGCAGATTGATTGAAGGACAGGGTCGATATGTTATTGATGCTTCTAGATATGGAAATGTCTCGAGGTTCATCAATCATAGCTGCTCACCCAATCTTGTGAATCACCAAGTTCTTGTAGAAAGCATGGACTGTGAACGTACACATATTGGTCTTTACGCAAGTCGAGATATTGCATTGGGGGAAGAATTGACATATGACTATCATTACGAGCTTCTTCCGGGGGAAGGTTCTCCTTGCCACTGTGGATCTTTGAAGTGCCGGGGACGCCTTCACTGA 4527 0.4177 MEVLPCSGVQYAAESDGPQQSSVTSFVYEGEPNCSENGERLELEDGQRNDSLLKMKGPQVEGQGGVQEAVGKLSVNPDWQCSGASNCECQAVDQKESSSLHAFDEDEIDEPCLISENPIPFVDTIESESPNNSRDGELPLAEPSWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHGRKKYFVIFFPHTRNYSWADMMLVCSINEFPQPIAYKTHQAGLKMVKDLSVARRFIMQKLVVGMLNIIDQFHFDALIEAARDVMFWKEFALEASQSNGYSDLGRMLQKLQNSIMQRYINANWLQHSFPIWIDRCQNASSAESVELLKEELFDSILWNDIGTLWDAPVQPILGSEWKTWKHEVMKLFFTSSSLYSSKDMQQQQTSDGPFQTGLQVCRKRPKLEVRRADIHASQVETKGSDHSIALETDSGFFSHQDIVNTLAAGTCIQEELREAPIPIDSPSNLANKWNNLVVESAADSEFLHTKAMESTPINEMVGPKSIEPGSKNRQCVAYIEAKGRQCVRWANDGDVYCCVHLSTRFLGSSARAERPVSVDAPMCEGTTVLGTRCKHRALPGSSFCKKHRPHAETDHTPNLPPTSLKRKHEETYTGLESMFCKEIVLADAESPLQVDPVSAMDDDTFHGNSNLNGKPMHSGNDHNAMEEHRCIGSSPFDDKNPCLETPKRYFLYCEKHLPSWLKRARNGKSRIISKEVFAELLRECFLQEQKVNLHKACELFYRLFKSILSLRNPVPKEVQFQWALTEASKDTSVREFFKKLVHSEKERIKMIWGFNNDKDAPSLMEEIPQLPSTVNDSFVNENVIECKICSAEFPDDLALGSHWMENHKKESQWLFRGYACAICLDSFTNKKVLENHVQERHRVQFVEQCMLLQCIPCGSHFGNTEQLWLHVLSAHPVDFKASKAPKQQTLSTGEDSSIQLEAKQVNSASLENNLQNSGGSRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVSSRPSKKGVRYYAYRLKSGRLSRPRFKKSLVSASYRIRSRASANLKRRIQATKSLGIGGITIQPQVTETTNIAELPEYQCSAVAKILFSEIQKTKPRPNNHDIISISRFACCKVGLQAALEEKFGTLPEKMYLKAAKLCSEHNILVSWHQEWLNCPRGCKALKDQPLLSDLASLPNGFVRQKALNLSDPAVDEWEVDEFHYTINSHHLKPESLQKSIVLCDDISFGKESVPVICVVDQGLRNSLHICGSNEHDTNLSMTWESFTYITKPMLDQSLNLDSESLQLGCSCSYSTCSPETCAHVYLFDNDYEDARDIFGKSMRGRFPYDENGRMILEEGYLVYECNYSCRCSKTCPNRILQNGVRVKLEVFKTEKKGWAIRAGEAILRGTFVCEYVGEVLNEQEAHNRRKRYGIEGCRYFLDIDAHINDMSRLIEGQGRYVIDASRYGNVSRFINHSCSPNLVNHQVLVESMDCERTHIGLYASRDIALGEELTYDYHYELLPGEGSPCHCGSLKCRGRLH 1508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0226 1508 Gene3D SET domain 1202 1508 IPR046341 -
Lele52g0226 1508 ProSiteProfiles Post-SET domain profile. 1492 1508 IPR003616 -
Lele52g0226 1508 Gene3D Classic Zinc Finger 817 887 - -
Lele52g0226 1508 MobiDBLite consensus disorder prediction 1 39 - -
Lele52g0226 1508 Pfam Zinc finger C2H2-type, 3 repeats 858 985 IPR040689 -
Lele52g0226 1508 ProSiteProfiles Zinc finger C2H2 type domain profile. 856 879 IPR013087 -
Lele52g0226 1508 Pfam Pre-SET motif 1214 1345 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele52g0226 1508 ProSitePatterns Zinc finger C2H2 type domain signature. 963 984 IPR013087 -
Lele52g0226 1508 SMART c2h2final6 890 913 IPR013087 -
Lele52g0226 1508 SMART c2h2final6 961 984 IPR013087 -
Lele52g0226 1508 SMART c2h2final6 822 845 IPR013087 -
Lele52g0226 1508 SMART c2h2final6 856 879 IPR013087 -
Lele52g0226 1508 Pfam SET domain 1364 1484 IPR001214 GO:0005515
Lele52g0226 1508 SMART set_7 1353 1491 IPR001214 GO:0005515
Lele52g0226 1508 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1508 - -
Lele52g0226 1508 SMART preset_2 1210 1337 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele52g0226 1508 ProSitePatterns Zinc finger C2H2 type domain signature. 824 845 IPR013087 -
Lele52g0226 1508 ProSitePatterns Zinc finger C2H2 type domain signature. 892 913 IPR013087 -
Lele52g0226 1508 ProSiteProfiles SET domain profile. 1353 1485 IPR001214 GO:0005515
Lele52g0226 1508 ProSitePatterns Zinc finger C2H2 type domain signature. 858 879 IPR013087 -
Lele52g0226 1508 SUPERFAMILY SET domain 1202 1498 IPR046341 -
Lele52g0226 1508 MobiDBLite consensus disorder prediction 13 31 - -
Lele52g0226 1508 MobiDBLite consensus disorder prediction 582 604 - -
Lele52g0226 1508 ProSiteProfiles Pre-SET domain profile. 1274 1350 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lele52g0226 1508 ProSiteProfiles Zinc finger C2H2 type domain profile. 961 989 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0226 Lele-ChrLele52 1343219 1351820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0226 135 1507 C2H2 Transcription Factor Family AT2G23740 51.583 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele52g0226 Pre-SET 1.5e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0226 52 1343219 1351820 Lele53g0085 53 655842 658577 CCT
Lele52g0226 52 1343219 1351820 Lele54g0087 54 727906 730658 CCT
Lele52g0226 52 1343219 1351820 Lele55g1410 55 20402876 20405624 CCT
Lele52g0226 52 1343219 1351820 Lele56g1344 56 16632593 16635574 CCT
Lele49g0210 49 1245828 1254119 Lele52g0226 52 1343219 1351820 hybridization
Lele50g0223 50 1323449 1331938 Lele52g0226 52 1343219 1351820 hybridization