Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0222 ATGTCAACCTCTCACGAGTCTTCTCAGCTGCTTCTTGAGATCAGTATCACTGTAAAGGAGCAAATAGGGTTATACGGTCCTGAGAAGGGAGACCGGGAAGGTGACGGGATGGATGGGGAGTTGGATTGGTCACGGAAGAAGACGCGAGATTGGCAAGGAGCCAAAAATCTGTGCGCCGGAAGTTGCGAAGTAGTAGCGGTGACCTCCTGTGTCTCGGTCTTACATTCTACCTCCCCTCATTTTCTATGTCTCCATACCATCCGAAGTGAATTTTCTCACTCGTACGGTTCTTGCAGCATGGACCTGGCGGAGCTAACTGTAGAACAAGTTTTGAGGAGGGATATCCCATGGGAGACGTACATGAGCACTAAGTTGATCTCAGGCACAAGCCTTCAGCTCTTAAGGCGTTATGATCACAAATCACAAAGTCAAAGAGCACAGTTGTTGGATGATGATGGTCCAGCTTATGTACGTGTGTTTGTTCATGTTTTGCGTGATATACATAAAGATGAGACGGTGGAATATGTTCTGGCCTTAATAGATGAAATGCTTACAGCAAATCCAAAAAGAGCAAGGCTGTTTCATGATAAGTCCCTTGCAGATGATGATGCCTATGAACCATTCTTAAATTGCTTTGGAAGGGAAATTGGTTCATACAAGAGAAAAGTTGACAGCAGTGTTGCAAATGGAGAGGCATCAAAATCAAAGAAGCCATTTATTACTATTGATGATGTTTTAAAAGAATTGGTAAAATGGCTTTGTGAACAGTTGAGGAATCCTACTCATCCTAGTCGTGGTGTGCCAACTGCTATCAACTGTTTATCAACTCTTCTTAAGGAACCTATGGTTAGATCTTCCTTTGTTCAGGCAGGTGGAATCAAGTTGCTTGTACCTTTGATTTCTCCAGCATCCACCCAACAGTCTATTCAGCTCCTATATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCAAGAACCCTTCCCCGACTTATTGATGTTGTTAAGAGTTCTACTAAAGAGAAGGTGGTTAGAGTAGTAATCTTAACTCTCAAGAACTTGCTGTCAAAAGGGACATTGGGTGCTCAAATGGTTGACCTCCAGTTGCCACAAGTTGTTCAGAGTTTGAAAGCACAGGCATGGAGTGATGAGGACTTGTTGGAGGCGCTGAATTACCTGGAAGAAGGGCTTAAGGATAACATTAAGAAACTTAGTTCTTATGACAAATATAAGCAAGAAGTTCTCCTTGGCAACCTGGATTGGTCTCCAATGCACAAAGATCCTATGTTTTGGCGAGAAAATATTACCAACTTTGAAGAAAATGACTTTCAGATTTTAAGAGTCCTACTAACAATTTTAGACACGTCCGGTGATCCAAGAAGTCTGGCTATTGCATGCTTTGACCTTTCACAATTCGTCCAACATCATCCTGCCGGGAGAATCATAGTGACAGACCTTAAAGCCAAGGAACGGGTAATGAGACTAATGAATCATGAGAACGCTGAGGTCACTAAAAATGCACTGCTCTTCATCCAACGGCTCTTCTTAGGTGCGAAGTATGCAAGCTTTTTGCAGGCTTAG 1611 0.4271 MSTSHESSQLLLEISITVKEQIGLYGPEKGDREGDGMDGELDWSRKKTRDWQGAKNLCAGSCEVVAVTSCVSVLHSTSPHFLCLHTIRSEFSHSYGSCSMDLAELTVEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHKSQSQRAQLLDDDGPAYVRVFVHVLRDIHKDETVEYVLALIDEMLTANPKRARLFHDKSLADDDAYEPFLNCFGREIGSYKRKVDSSVANGEASKSKKPFITIDDVLKELVKWLCEQLRNPTHPSRGVPTAINCLSTLLKEPMVRSSFVQAGGIKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVILTLKNLLSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNYLEEGLKDNIKKLSSYDKYKQEVLLGNLDWSPMHKDPMFWRENITNFEENDFQILRVLLTILDTSGDPRSLAIACFDLSQFVQHHPAGRIIVTDLKAKERVMRLMNHENAEVTKNALLFIQRLFLGAKYASFLQA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0222 536 Pfam V-ATPase subunit H 413 525 IPR011987 GO:0000221|GO:1902600
Lele52g0222 536 Pfam V-ATPase subunit H 107 407 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lele52g0222 536 Gene3D - 428 528 IPR038497 -
Lele52g0222 536 SMART arm_5 486 526 IPR000225 GO:0005515
Lele52g0222 536 SMART arm_5 325 366 IPR000225 GO:0005515
Lele52g0222 536 SMART arm_5 280 324 IPR000225 GO:0005515
Lele52g0222 536 FunFam V-type proton ATPase subunit H 427 528 - -
Lele52g0222 536 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 99 535 IPR004908 GO:0000221|GO:0046961|GO:1902600
Lele52g0222 536 SUPERFAMILY ARM repeat 107 526 IPR016024 -
Lele52g0222 536 Gene3D - 99 415 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0222 Lele-ChrLele52 1304938 1312338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0222 100 536 Primary Pumps ATPases(2) AT3G42050 73.451 0.0 674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0205 49 1208579 1214354 Lele52g0222 52 1304938 1312338 hybridization
Lele50g0218 50 1285007 1293796 Lele52g0222 52 1304938 1312338 hybridization