Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0221 ATGCGTCTCTTTCTCCTCATCCCAATCTTCTCTTTCGCTCTGTTCTGCTGTTTCCCTCTGATTCTGGGGCAGCAACCTTATATTGGTTTGGGCACAGTGGCCTGCCCTAGAAAGGGCAATTCAAAATCTATTCGTGGTTACTCTTGCAACGGCGTTGCTCATAGCTGCCAAGCTTACCTCATCTTCAGATCCCAACCCCTTTACTACTCTGTTTCCGCAATTTCTGCTCTTCTTGGCTCTGATCCATCTCAAGTTTCTGAGATCAACTCTGTTTCTCTGAATGCCACCTTTGCCAATAATCAAATGGTGATTGTTCCCGTCAACTGCTCCTGTGCCAGTGATTATTATCAGACTAACACTTCCTACACTGTCCACAGAACAGAAACGTACCTTTTGATTGCTAACAACACTTTCCAAGGCCTCTCAACCTGTCAAGCTCTCATGCATGAAAACAACATTCCTGGAGATCTATTTCCCGGTACAAAACTTACAGTCCCTCTCAGATGTGCTTGTCCCACAAAAACTCAAACTGACAAAGGTGTCAAGTACTTACTGAGTTACACGGTCGATTGGGGTGATTCTGTTTCCTACATCAGTGAAATATTTGGTGCAGCCACTGATCTCACTCTTGAATCAAATATCCTTTCTCCTCAAGATTTGATTTATCCCTTTACCACACTTTTGGTGCCTCTTCAACATAAACCAAACATCTCTCGAATCCTGGTATCTCCCCCTCCACCATCTTCATCCCCCCCACCTTCATCTTCTACCTCAGGTGGCAGATCAAATAACAAGACATGGATATATGCAGTTGTTGGAGCTGTCGGAGGTATTGCCTTGATATCACTCCTTCTCCTTGGCATACTTGTTTTCCGTAAACGGTATCCTAGGAGCGAAAAGAAAGATGATTCTGCAGTAGTGTCAAAGATTTTCGAGGCAACGGAGAAACCAGAAGGGGAAAAGGTCGGGGAAGAGTCGGAAACGTTGTCGGAGATAATAACAGGAATAGCTCAGTCTTTCAAAGTGTACGGATTTAAGGAACTACAGCGCGCAACGGATAATTTCAGCTCAAGCTGCTGCATCAAAGGGAGTGTTTATTGCGGGATGATTAATGGTGATTTGGCCGCTATTAAAAAGATGGATGGCGATGTGTCGAAAGAGATAGCAATTCTTAACAAAGCCAACCACTCTAATGTGATACGCCTTTCGGGGGTCAGCTTCAACGAAGGCCATTGGTTTCTGGTTTATGAGTATGCCGCTAACGGATCCTTGACTGATTGGATCTTCGTCAACAACAGGGACGGAAAGTTTTTGAGTTGGATTCAGAGAATGCAAATAGCATTGGATGTGGCCACAGGACTTGACTATCTCCATAGTTTCACTTCTCCTCCACTTATCCACAAGAATCTCAATAGTGATAACATACTTCTGGATACTGATTTGAGGGCCAAGATTGCCAACTTGGGGCTTGCAAGATCAGTAGAAGGAGAGGATGATGAATTCCCCATGACGAGGCATATTGTTGGAACAAGAGGCTATATGGCTCCTGAGTATCTAGAAAATGGCATAATCTCTACAAAACAAGATGTGTATGCATTTGGGGTTGTGATGCTGGAGATATTAAGTGGAAAAGAGGTTGCTGGTTTTCATTCAGAAGATGAAGGGAGTTTGTCAGATGTTTTAAGTGTAATTCCTGAAGAGGAGAAACTGAGGGATTTTATGGATCCTCGTCTGATTGGAAAGTTTCCGGTGGAACTTGCTGTGTTTGTGGTTAGAATGATTGATAATTGCTTGAGGAAAGATCCGGCGAGTCGCCCAGCCATGCGTGAAATAATGTCTTCTCTCTCTGTAACGTTGAACTCTTCATTGGCCTTGTAA 1878 0.4382 MRLFLLIPIFSFALFCCFPLILGQQPYIGLGTVACPRKGNSKSIRGYSCNGVAHSCQAYLIFRSQPLYYSVSAISALLGSDPSQVSEINSVSLNATFANNQMVIVPVNCSCASDYYQTNTSYTVHRTETYLLIANNTFQGLSTCQALMHENNIPGDLFPGTKLTVPLRCACPTKTQTDKGVKYLLSYTVDWGDSVSYISEIFGAATDLTLESNILSPQDLIYPFTTLLVPLQHKPNISRILVSPPPPSSSPPPSSSTSGGRSNNKTWIYAVVGAVGGIALISLLLLGILVFRKRYPRSEKKDDSAVVSKIFEATEKPEGEKVGEESETLSEIITGIAQSFKVYGFKELQRATDNFSSSCCIKGSVYCGMINGDLAAIKKMDGDVSKEIAILNKANHSNVIRLSGVSFNEGHWFLVYEYAANGSLTDWIFVNNRDGKFLSWIQRMQIALDVATGLDYLHSFTSPPLIHKNLNSDNILLDTDLRAKIANLGLARSVEGEDDEFPMTRHIVGTRGYMAPEYLENGIISTKQDVYAFGVVMLEILSGKEVAGFHSEDEGSLSDVLSVIPEEEKLRDFMDPRLIGKFPVELAVFVVRMIDNCLRKDPASRPAMREIMSSLSVTLNSSLAL 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0221 625 Pfam LysM domain 187 230 IPR018392 -
Lele52g0221 625 MobiDBLite consensus disorder prediction 240 261 - -
Lele52g0221 625 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 622 - -
Lele52g0221 625 ProSiteProfiles LysM domain profile. 185 229 IPR018392 -
Lele52g0221 625 ProSiteProfiles Protein kinase domain profile. 296 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0221 625 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Lele52g0221 625 FunFam PTI1-like tyrosine-protein kinase 3 419 624 - -
Lele52g0221 625 Gene3D Phosphorylase Kinase; domain 1 320 418 - -
Lele52g0221 625 Pfam Protein kinase domain 378 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0221 625 Gene3D Transferase(Phosphotransferase) domain 1 420 623 - -
Lele52g0221 625 Gene3D LysM domain 116 179 IPR036779 -
Lele52g0221 625 Gene3D LysM domain 185 239 IPR036779 -
Lele52g0221 625 SUPERFAMILY Protein kinase-like (PK-like) 338 615 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0221 Lele-ChrLele52 1301592 1303469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0221 1 619 Receptor kinase-like Gene Family AT2G23770 44.569 8.31e-172 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lele52g0221 Pkinase 4.2e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0202 49 1202644 1204562 Lele52g0221 52 1301592 1303469 hybridization
Lele50g0217 50 1277933 1279858 Lele52g0221 52 1301592 1303469 hybridization