Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0208 ATGAATCCTCATCCTATGGACGACCACATGGTGCTTGTCTCTCAGCTGTACCCTGGTGCTTACTCTCAAATAATTCCTCAACAAGGTTTCCATCTTTGGGAGACAAAGCCGAGGCGACGTCGTAAGAAGAACAAGGGAGGAGAAAGCGGAGATGGGGGACTGAAGAAGAGGAAGCTGAGTGCAGAGCAAGTGAATCTTCTAGAGCTAAACTTTGGGAACGAACATAAATTGGAGTCGGAACGGAAGGACAGGCTGGCGTCGGAGCTGGGGTTGGATCCGCGTCAAGTGGCCGTTTGGTTCCAAAACCGAAGGGCGCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCCAACCTTAAGAAAGTCCACGAGTCCACCATTCTCGAGAAATGCCGCCTTGAAACCGAGGTACTGAAGCTGAAAGAGCAGCTTTCAGAAGCAGAGAAAGATATTCAACGGCTTCTGGAGCGAGCCGAGAGGGTATCAAGCAGCAACAGTTCCACTTCGTCACAGTCGATGGAAGCTGTGAACCCCCCATTTCTGGGAGATCTCAGTGTTGAAGCTTATGAAGATGACGTGTTTTACATGCCACAGACCCATTACATCAATGGCATGGACGAGTGGATATACATGTGA 636 0.4953 MNPHPMDDHMVLVSQLYPGAYSQIIPQQGFHLWETKPRRRRKKNKGGESGDGGLKKRKLSAEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKVHESTILEKCRLETEVLKLKEQLSEAEKDIQRLLERAERVSSSNSSTSSQSMEAVNPPFLGDLSVEAYEDDVFYMPQTHYINGMDEWIYM 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0208 211 CDD homeodomain 55 111 IPR001356 GO:0003677
Lele52g0208 211 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Lele52g0208 211 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Lele52g0208 211 SUPERFAMILY Homeodomain-like 54 118 IPR009057 -
Lele52g0208 211 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Lele52g0208 211 SMART HOX_1 53 114 IPR001356 GO:0003677
Lele52g0208 211 Coils Coil 137 164 - -
Lele52g0208 211 FunFam homeobox-leucine zipper protein ATHB-40 49 118 - -
Lele52g0208 211 Pfam Homeodomain 56 109 IPR001356 GO:0003677
Lele52g0208 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 45 171 IPR045224 GO:0003700
Lele52g0208 211 MobiDBLite consensus disorder prediction 33 57 - -
Lele52g0208 211 Coils Coil 102 129 - -
Lele52g0208 211 Gene3D - 48 119 - -
Lele52g0208 211 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0208 Lele-ChrLele52 1226869 1228496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0208 1 209 Homeobox Transcription Factor Family AT2G18550 53.363 2.77e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele52g0208 Homeodomain 3.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0075 53 582019 582800 Lele52g0208 52 1226869 1228496 CCT
Lele55g1423 55 20483816 20484772 Lele52g0208 52 1226869 1228496 CCT
Lele56g1355 56 16721885 16722841 Lele52g0208 52 1226869 1228496 CCT
Lele49g0189 49 1129608 1132689 Lele52g0208 52 1226869 1228496 hybridization
Lele50g0205 50 1206234 1207838 Lele52g0208 52 1226869 1228496 hybridization