Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0199 ATGCCAGTTGATTTAGATAATTCTTCGACAGCTTCAGGGGAAGCTAGCGTCTCTTCATCTGGCAATCAGACTGCTCCTCCAAAGTCCACTGCTAAGAAGAAGAGAAATCTTCCAGGAATGCCAGATCCAGACGCGGAGGTGATTGCACTGTCTCCGAAAACCCTTTTAGCGACGAACCGATTCGTGTGTGAAATCTGCAACAAAGGATTTCAGAGGGATCAGAATCTTCAACTCCATCGACGGGGTCATAATCTGCCATGGAAGCTGAGGCAGAGGTCCAGCAAGGAGGTGAGGAAAAGAGTCTATGTCTGTCCCGAGCCAACCTGCGTTCATCATGATCCCTCCAGAGCGTTGGGTGATCTCACTGGAATAAAGAAGCATTTCTGTAGAAAACATGGTGAAAAGAAGTGGAAATGCGACAAGTGTTCAAAGAAATATGCAGTTCAGTCAGATTGGAAGGCTCACTCGAAGATTTGTGGCACCAGAGAGTACAAATGCGATTGCGGGACTCTGTTTTCAAGGAGGGATAGCTTCATCACACACAGGGCATTCTGTGATGCGTTGGCAGAGGAGAGCGCAAGAAATCAGCCTCAGACTCAGACTCAGACTCAGACTCAGACTGAGACTCAAACCCAAACCCAAACCCAGACGCAAGCTCCTGAGAAGCCTAATTCAGAGTCGGACCCAAAAAGTCTAAGCGGCGATTCATCCCCTACAGTTCCTGCGCCGGCGCCACAGCCACCTCCACCACCTATAGCCCCCCCTCCTGCTCCTCAGTCAAATAGCGTCATACCATCTACGTTGCAGACGAAAAATCCAGAGATGCCCAAAAATCCTTCGCGAATCATAGAGGAACCACAGGCCACTACTGCTCTAAACGGTAGCTGTAGCAGCAGTACTAGTTCAACCAGCAATGGCGGCACCAGCAGTACTGTATTTGCAAGCTTGTTTGCTTCCTCTACTGCTTCCGGAAGCCTGCAACCTCCTCCTCCTCCTCAACCTCAAGCTCCTCCTGCATTTACTGACCTAATACGTGCCATGGCTCGTCCGGATCGTCCTGCAGAGCTCTCAGGGCCTTCCTCTTCTGAACCCATTTCTCTCTGCCTCTCCACTAGCAATGGGTCGTCAATATTTGGAACAGGAGGACAGGAACGTCGCCAGTATGCCCCACCACCACAACCAGCTATGTCGGCCACCGCGCTACTACAGAAAGCTGCTCAAATGGGTGCAGCAGCAACAAACGCATCGTTGCTTTGTGGGTTTGGTATAGTGTCATCTTCCTCATCCTCACCATCATTAAGCTTGCAAGATAACGTGCCATGGGGTCAGAGGCAAGTAGAACCAGAGAGTGCGTCTGTTCACGCAGGGCTTGGTCTTGGACTCCCATGTGACGGTGGATCTGGATTGAAGGAATTGATGATGGGGACGCCGTCGGTGTTCGGTCCAAAGCACACAACACTGGACTTTCTGGGATTGGGGATGGCCGCGGGCGGTGGCACCCCTAGTGGAGGCTTATCAGCACTCATCACTTCCATTGGTAGTGGTCTGGATGTTTCTGCCACAGCAAGACCCTTTGGTAGTGGAGAGATTTCAGGTAAAGATATTGGGAGGAGCTCGTGA 1620 0.5111 MPVDLDNSSTASGEASVSSSGNQTAPPKSTAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARNQPQTQTQTQTQTETQTQTQTQTQAPEKPNSESDPKSLSGDSSPTVPAPAPQPPPPPIAPPPAPQSNSVIPSTLQTKNPEMPKNPSRIIEEPQATTALNGSCSSSTSSTSNGGTSSTVFASLFASSTASGSLQPPPPPQPQAPPAFTDLIRAMARPDRPAELSGPSSSEPISLCLSTSNGSSIFGTGGQERRQYAPPPQPAMSATALLQKAAQMGAAATNASLLCGFGIVSSSSSSPSLSLQDNVPWGQRQVEPESASVHAGLGLGLPCDGGSGLKELMMGTPSVFGPKHTTLDFLGLGMAAGGGTPSGGLSALITSIGSGLDVSATARPFGSGEISGKDIGRSS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0199 539 FunFam protein indeterminate-domain 12-like 40 108 - -
Lele52g0199 539 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 498 IPR031140 -
Lele52g0199 539 MobiDBLite consensus disorder prediction 1 30 - -
Lele52g0199 539 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lele52g0199 539 Gene3D Classic Zinc Finger 41 107 - -
Lele52g0199 539 MobiDBLite consensus disorder prediction 191 280 - -
Lele52g0199 539 MobiDBLite consensus disorder prediction 240 261 - -
Lele52g0199 539 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lele52g0199 539 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Lele52g0199 539 Gene3D Classic Zinc Finger 115 196 - -
Lele52g0199 539 SMART c2h2final6 61 83 IPR013087 -
Lele52g0199 539 SMART c2h2final6 102 132 IPR013087 -
Lele52g0199 539 SMART c2h2final6 137 157 IPR013087 -
Lele52g0199 539 MobiDBLite consensus disorder prediction 1 44 - -
Lele52g0199 539 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Lele52g0199 539 MobiDBLite consensus disorder prediction 192 239 - -
Lele52g0199 539 MobiDBLite consensus disorder prediction 262 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0199 Lele-ChrLele52 1191680 1193994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0199 1 539 IDZ Gene Family AT5G66730 60.219 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele52g0199 None None None