Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0189 ATGGGAGACTACAATGATGCTTTCATGCGCAACCAAAACGCCGCCGTGCAGGCTCGAACCAAAGCTCAGAACCGCGCCAACGTCCTCCAGCTCAAGCTGATTGGACAGAGCCATCCAACTGGTCTCACGGCTAACCTTTTGAAACTGTTTGAGCCTAGGCCTCCGTTAGAGTATAAACCACCTCCAGAAAAAAGGAAATGTCCGCCATTAACAGGGATGGCACAGTTTGTGAGCAAGTTCGCTGAACCTGGAGATCCCGAATATTCTCCTCCTGTCCAAGAAGCTGAAACTCCTATGCAAAGAAGAGCTAGGATACACAAGCTAAGATTGGAGAAGGGAGCAGCAAAGGCTGCTGAAGAGCTAGAAAAATATGATCCACATAATGACCCAAATATTTCGGGAGATCCCTACAAGACCTTGTTCGTGGCCAGACTTAGTTATGAGAGCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCTTATGGTCCAATCAAACGGGTTCGATTGGTTGCAGACAAAGACACAAATAAGCCCAAGGGTTATGCATTCATTGAGTACCTGCACACAAGGGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGAAGGACTGTTCCTAATTGGAGGCCTCGCCGACTAGGTGGTGGGCTTGGTACTACTAGAGTAGGGGGTGAAGAAGTTAATCAGCGGTATTCTGGGAGGGAACAACTGCAATCAGGACCCTCTCATTCTGAAGAACCAAAGGTGCGGGATGAACGGCAGGTTGATCGGGATAGAGAAAAATCTCGTGAAAGAGTTAAGGACAGAGATAGAGAACGGGAACGATCACGTGAACGCTCTCATGATAGGAATCGTACTCGGGATCATAGGGAGGATAGACATCATAGAGATCGAGACAGGACTAGAGACAGAGAAAGGGAAAGGGAAAGAGACCGTGGTCGCGATCGAGATAGAGACCGTGGTCGTGATCGAGAGCGAGGACGTGATCGTGATAGGGAGAGGGATCGTGATCGCCATCGTGAAAAGGATAGGGACTATGAAGCTAGGGACCTTGAACGCGGACGCTCGCATGATAGGGAGTCTGATTATGATCGCGTTGATTCCAAACATGAGAGGGACAGGCATGGTGAAAGTGAGCGAGACTATGAACCTGAGGATGATCGTGCATGGTACAAACAATCTGAGGATGGACATAGGCATGCAGACCCTGATCGTGATGCTAAGGAGTATGACCACTATGAACATCATGGACGAGGGCATTATGATCGTGGAGATGGTGACCATTATGATCCATATCCTGACCATGATAGGCTCGAGGATGACTACCACAACGAACACACAGCATCTGAATCTCATGACCGGGAGGAAAATCGTGATACAGAGAGGTCTCGTTCCCGAGAGTATGATTACTAG 1455 0.4832 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYSPPVQEAETPMQRRARIHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVARLSYESTESRIKREFESYGPIKRVRLVADKDTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQLQSGPSHSEEPKVRDERQVDRDREKSRERVKDRDRERERSRERSHDRNRTRDHREDRHHRDRDRTRDRERERERDRGRDRDRDRGRDRERGRDRDRERDRDRHREKDRDYEARDLERGRSHDRESDYDRVDSKHERDRHGESERDYEPEDDRAWYKQSEDGHRHADPDRDAKEYDHYEHHGRGHYDRGDGDHYDPYPDHDRLEDDYHNEHTASESHDREENRDTERSRSREYDY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0189 484 MobiDBLite consensus disorder prediction 258 484 - -
Lele52g0189 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Lele52g0189 484 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Lele52g0189 484 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Lele52g0189 484 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 331 - -
Lele52g0189 484 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Lele52g0189 484 MobiDBLite consensus disorder prediction 221 484 - -
Lele52g0189 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Lele52g0189 484 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Lele52g0189 484 SMART rrm1_1 139 212 IPR000504 GO:0003723
Lele52g0189 484 Gene3D - 125 250 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0189 Lele-ChrLele52 1117020 1121398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0189 140 186 C2H2 Transcription Factor Family AT2G19380 40.426 4.46e-07 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0169 49 1033652 1038108 Lele52g0189 52 1117020 1121398 hybridization
Lele50g0189 50 1110615 1112395 Lele52g0189 52 1117020 1121398 hybridization