Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0185 ATGTTATACTGCTTGAAATTATTTCAGAAGAAAGCCAAAAGGGCAGTAGCTGCCATGCTTACAAGGTCTAAAGAAAGTGAGAGTGCTGAAGATATGGACCTGACAGAAGAGGAAAGAATTGATAAGGAGCAGAAAGAGCTCATACCTCTGTTGACAGGTGGAAAGTTGAAGCAATATCAAATGAAGGGTGTCAAATGGTTGATCTCCTTGTGGCAAAATGGACTGAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGTTTCCTTGCACATCTGAAAGGGAAAGGTTTGGATGGCCCATATTTGATCATTGCGCCTCTATCAACCCTTTCTAATTGGATGAGTGAAATTTCTCGGTTTGCTCCAACACTCACTACCATTATTTACCATGGTGACAAGAAGGAAAGAGATGAGATTCGAAGGAAGCATATGCCCGGAACAATTGGCCAAAAATTTCCCATAGTCATCACTTCCTATGAAGTTGCGTTAAATGACGCTAAGAGATGTCTCAGGTTCTACCATTGGAAGTATATTGTAATTGACGAGGGACACAGGCTCAAAAACTCAAAATGCAAGTTAGTGCAGATGTTGAAATTCTTACCTGTTGAAAACAAACTTCTTTTAACTGGGACACCTCTTCAGAATAACTTGGCTGAGCTATGGTCATTGTTGAATTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCATGCAGTATAAGTGATTGCTTATTTCCATTTGTTGTAGCTAAGCTCCATGCCATCCTGCGCCCCTTTCTTCTCCGAAGGATGAAGAGTGATGTTGAGCAGATGTTACCACGAAAGAAAGAGATCATTATATATGCCACTATGACTGAACATCAGAAGAATTTCCAGGAACATTTAATTAATAAGACATTGGAGAAATATCTGCGTGAAAAATCTGCAGGGGGACGTGCTTCAAAAAATATTCGTAATGTGGTCATTCAGCTTAGAAAGAACTGTAATCATCCTGACCTCTTAGAGTCGGCCTTTGATGACTCGTTTTTCTATCCACCTGTCGATGAGATGGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGTCTGTTGGCTCATTTACTTGCTCGGAAACACAAAGTTCTAATCTTCAGTCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGAATTGATGGCAGTGTAAAGCTAGATGAAAGGAAAAGACAGATTCAGGAGTTCAATGATGTGAATAGCAATTACAGGATCTTTCTTCTCAGTACTAGGGCTGGTGGATTGGGAATTAACCTTACTGCAGCTGACACTTGTATCATTTATGACAGTGATTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCACAGAATAGGTCAAACTAAGCCTGTTCATGTTTACAGGCTTGCGACAGCTCATTCTGTGGAGGTACATGGCTACCTTGTATTGTGGTTTGGTGATGTGATTGATGTTTGCCTATCTGGATATCAAGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGGAAGGGACAATTTCATCAAGAACGGATGAAGTCCAACCCTATGGATATCAAAGAAGAGGATGAGGAATTGTTGGAAATGCTTCAAGAGGAAGAATCTGCTGAAGACAAAGCTATCCAAACAGATATTAGTGATGAAGACTTGGAGAAGCTTTTGGATCGCAGTGATCTTGTCGCTGGTAACTTAAATTGCCCGAGCAAAATTCCTCTTGAAGGGCCTGGATGGGAGGTGGTGATTCCAACTGGGAGCGTGCTTTCTACTCTGAATAGCTAA 1875 0.4069 MLYCLKLFQKKAKRAVAAMLTRSKESESAEDMDLTEEERIDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWMSEISRFAPTLTTIIYHGDKKERDEIRRKHMPGTIGQKFPIVITSYEVALNDAKRCLRFYHWKYIVIDEGHRLKNSKCKLVQMLKFLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESCSISDCLFPFVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYATMTEHQKNFQEHLINKTLEKYLREKSAGGRASKNIRNVVIQLRKNCNHPDLLESAFDDSFFYPPVDEMVEQCGKFRLLDRLLAHLLARKHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGSVKLDERKRQIQEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAHSVEVHGYLVLWFGDVIDVCLSGYQGRMLKRAFSKLKLEHVVIGKGQFHQERMKSNPMDIKEEDEELLEMLQEEESAEDKAIQTDISDEDLEKLLDRSDLVAGNLNCPSKIPLEGPGWEVVIPTGSVLSTLNS 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0185 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 587 IPR027417 -
Lele52g0185 624 FunFam lymphoid-specific helicase isoform X1 32 296 - -
Lele52g0185 624 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 236 IPR014001 -
Lele52g0185 624 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 583 IPR001650 -
Lele52g0185 624 Gene3D - 282 495 IPR027417 -
Lele52g0185 624 Gene3D - 51 281 IPR038718 -
Lele52g0185 624 Coils Coil 551 571 - -
Lele52g0185 624 Pfam SNF2-related domain 59 342 IPR000330 GO:0005524|GO:0140658
Lele52g0185 624 Pfam Helicase conserved C-terminal domain 367 478 IPR001650 -
Lele52g0185 624 SMART helicmild6 394 478 IPR001650 -
Lele52g0185 624 FunFam Chromatin complex subunit A 106 282 502 - -
Lele52g0185 624 PANTHER SNF2/RAD54 HELICASE FAMILY 22 569 - -
Lele52g0185 624 CDD SF2_C_SNF 354 488 - -
Lele52g0185 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 272 IPR027417 -
Lele52g0185 624 SMART ultradead3 52 244 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0185 Lele-ChrLele52 1103527 1108099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0185 42 495 RAD5 or RAD16-like Gene Family AT3G16600 24.911 3.33e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele52g0185 SNF2_N 1.7e-65 CL0023