Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0176 ATGGACTCTATGGACTTGAAGGTGAGAGAGCTATTGAAGGAGGTACAGCTATACTATTCTCCTCCATTCACCAAGTTCGTTGATGACACTGTCTCCGCCATCAAAGCATCCATCGATAAGATCCCGGAAGATGTTAAGGTGACGGCCGATATAGCTCCCGATTTTGTAAGGGACATTGGCGCTGATAAAGTTGAGTTCAAGTTCAAGAAGCCAACATCTATCAAAATCGGGGGCAGTTATGCTACGCAAACTCTTGCAAAGCCTGAAGTAAATGTAGACCTTATCATCAGGTTGCCTAAGGAGAGTTTCCATGAGAAAGATTACTTAAATTATAGATATCATGCCAAGAGATGCCTGTATCTTTGCTTGCTGAAAAAGTACTTGGATACTTCTGCATCTTTTGATAAGCAGCAGTGTTCTGTAGTGTGCTATCTTTTAATATACAATTATTTTGCTAATAAAGAAAATGGCATTGCAGCTGTAAAGCTTGCTGAAGTTCCTGGTGTTTGTATAAGAATAATTCCATCAGCGGTGTCTTTATTTAGCATATCAAGGCTGAACCTGATTCGTAATAACATTCATATTCCTGATCAAGGGACAGGTCTTGAGGCTACACCAAATTACAATAGTAGTATTCTGGAAGATATGTTTTTAGAGGATACAGAATTTATTGATAAAAGTTTTTCTAGATGGAAGGAACTAAGAGAAGCTTCAACTTTGCTGAAGGTTTGGGCTCAACAGAGAAGTTCAATATATGTTCATGATTGCCTAAGTGGATTTTTGATCTCTGCCATTCTGGCATACCTTCTGATAAGGCAGCAAATCAGCACATCGATGAAGGCAATCCAAATATTTCGTGTTACCATGAACTTTATTGCCAATTCAGAGTTGTGGAGCCGTGGGCTTTATTTTCCTCAGGAAGGCCAGAGTAACATTACAAAAGAGGAAAGGATTCAATTTAAAAAATCATTTCCAGTTGTTATTTGCAATCCATCTGGAAGATTCAATTTGGCTTTCCGGATGTCTAGAATTGGTTTTGCTGAGCTTCAAGATGAGGCTGCTTTGACACTTAAATGCTTGGATAATTGTAGAGATGGTGGATTTGAGGAAATTTTTATGACTAAGATTGACTATGCTGCTAAATACGACTACTGCATAAGAATAAATTTAAAGGGAAAGAAGGAGGTATATGCATTGGGATTTTGTTCAGACAATGAATGTTGGAGATTATATGAGGAGAAAGTACATGGTATTCTAACTAAAGGATTGAATGATAGAGCAAAGTTCATTCGTGTTACCTGGAGAAATATGCAGTCACAGTGGAGTGTAGATGATGGCCTGTCTGCACTTGATAAAGAACCTCTACTTATTGGAATTTCAGTGAGTAATTTGGAGAAAGCATTTAGGATGGTTGATATTGGCCCAAATTCTGAAAATAGTGAAGAGGCTCTAGAATTTCGGAAGTTTTGGGGGGAAAAAGCTGAGCTTAGGCGATTTAAAGACAGTAGAATTGCAGAAAGCACAGTCTGGGAAAGTGAGAAGTGGACAAGAAATCTTATTTTGAAAAGAATAGTGGAGCATATACTCAGTCGATATCTCTCTCTGTCAAAAGAAAATATTGTAGTTGCTGTGGATCAACTTGATTTCTCTTTGCGGCATGGAGCTGGAGATCCAATATCGTATTCTGAGAGTTTGCTTAAGGCATTTGATGTCTTATCGAAGCGCTTGCGTCTAGTTCCAGACATCCCTTTGAAGGTGTCTAGTGTACAACCTTTAAACTCTGCTTTCAGGTCTACATCAGTCTTCCCTCCTGAACCTCATCTTTGGGCTAATGAAAACATTGAGTCTGTTAAACTGAATAATGCCATTCCTTCGTGCATTCAACCACTGGAAGTTATGATTCAGCTGGAAGGTTCTGGTAACTGGCCAATGGATGAAGTTGCAGTGGAAAAGACAAAATCTGCCTTCCTTCTTCAGATTGGAGAGAGCCTTCAAAAACTATGGGGAATGACATGTATCGCGACTGAGGATAATGTGGATGTATTAGTATCTGGATATGCATTTCGTCTTAAAATTTTGCATGAGAGGGGCCTCAGTGAGAATGGTCAAGCAAAGCGTGTTTCTTCGAAAGACAAGAAACTTTTCATCTGTAGTCAGCATTCTAGCATGATTAATGGATTACAAAGCCGTTACCCAATATATGGATCAGTAGCTAGACTTGCAAAACGATGGGCTGCTTCACATCTATTTTCAGCTTGCTTGGTAGAGGAAGCAGTTGAGCTTTTGGTTGCTTATCTCTTTCTTAATCCTTTTCCATATAATACTCCTTGCTCAAGGATAACTGGATTTTTAAGGTTCCTGCGGTTACTCTCAGAGTATGACTGGACATTCTCTTCATTGGTTGTTGACATAAATAATGACTTAAGCCAAAGCGATAAGAAAGAAATAACTGATAACTTTATGTTAAGCAGAAAGGTTCAGGGAGAGAATGGACTAAGGCCAACTATGTTCATAGCAACGGTTTATGATAAAGCATCTGAGGCTTGGACTGGATCATCTCCAAGCGCATTGGAACTTAAACGGCTGGTGGCTTATGCCCGTAGTAGTGCAAACTTGTTGACGAAACTTATATTTCAGGATCACATTGGCCCATACAGATGGGAGTGCCTTTTCCGAACTCCTTTGAACACTTATGATGCCATAGTTCTTCTTCACAGAGATAAACTCCCTTATCCTCAAAGACTTCTCTTCCCGTCAGAAGTTGATCATGGAAAACATATTGCTAGAGGACATGCTAGCAAGTGTTTCCGACCTGTGCTTTTGCCAAGAGATTTGAAGGGGAGGCCAGATGAAGTTAAAAGTAAGTTGCTGGTTGACTTTGATCCATTAAGGTGCTTCATCAAGGATTTAGAGAAAGAGTTCTCCACCACGTTCAAGGTATGGTACGATTTGTTGGGAGGTGATGCTATTGGCCTAACGTGGGGTGAAAGTTATTCTTCAAAGAAACGGAAGCAAGAGGAAGTAGTTGAGGAGCACGGACATGACCCAAGCAAGTTGCTGAAATCAGTAGGTGATGCTGGGAAAGCGTTTGTGAAGAGTATTTACTTTCTCAAGCCCCCAAAATGCCTTGATCCATTTAACTTTTCAGGGAATTGTAAAGGAATTCAAATATATGTGCATCGATTGCATGCTTCCATGGAATTTGCGGGCAAAATTAAATGCCATCTCACTCTTATGTTGCGCAAATTTCCGCTGCGCTTTTTTCTTCCTCACTCGAAATTCACCGTTCTTCCTTTAATTGATGAAGATGAGCATATTTGTCATGTGCTGACCAGAATGGGTTGCAACAACCAGACTGATGAGAAACTATTTGTCACCCCTCAACCAAGAGTTACATTCTGCCAAAGGGGAAAGTCCAAGAATGGCAGCTTCGTGTCTACTTTAAGAAATCACTTTCATGAATTCATCCATGCTTCAATGGATGAACACAGGACATGCTTGAGAAATACAATGCAAAAGTTATTTGGAAGAAAGAGTGACAGCCCGAGTGAAAATGAAACATCTCTACCACTTCAATCAACTACTGAGGAGTAG 3594 0.399 MDSMDLKVRELLKEVQLYYSPPFTKFVDDTVSAIKASIDKIPEDVKVTADIAPDFVRDIGADKVEFKFKKPTSIKIGGSYATQTLAKPEVNVDLIIRLPKESFHEKDYLNYRYHAKRCLYLCLLKKYLDTSASFDKQQCSVVCYLLIYNYFANKENGIAAVKLAEVPGVCIRIIPSAVSLFSISRLNLIRNNIHIPDQGTGLEATPNYNSSILEDMFLEDTEFIDKSFSRWKELREASTLLKVWAQQRSSIYVHDCLSGFLISAILAYLLIRQQISTSMKAIQIFRVTMNFIANSELWSRGLYFPQEGQSNITKEERIQFKKSFPVVICNPSGRFNLAFRMSRIGFAELQDEAALTLKCLDNCRDGGFEEIFMTKIDYAAKYDYCIRINLKGKKEVYALGFCSDNECWRLYEEKVHGILTKGLNDRAKFIRVTWRNMQSQWSVDDGLSALDKEPLLIGISVSNLEKAFRMVDIGPNSENSEEALEFRKFWGEKAELRRFKDSRIAESTVWESEKWTRNLILKRIVEHILSRYLSLSKENIVVAVDQLDFSLRHGAGDPISYSESLLKAFDVLSKRLRLVPDIPLKVSSVQPLNSAFRSTSVFPPEPHLWANENIESVKLNNAIPSCIQPLEVMIQLEGSGNWPMDEVAVEKTKSAFLLQIGESLQKLWGMTCIATEDNVDVLVSGYAFRLKILHERGLSENGQAKRVSSKDKKLFICSQHSSMINGLQSRYPIYGSVARLAKRWAASHLFSACLVEEAVELLVAYLFLNPFPYNTPCSRITGFLRFLRLLSEYDWTFSSLVVDINNDLSQSDKKEITDNFMLSRKVQGENGLRPTMFIATVYDKASEAWTGSSPSALELKRLVAYARSSANLLTKLIFQDHIGPYRWECLFRTPLNTYDAIVLLHRDKLPYPQRLLFPSEVDHGKHIARGHASKCFRPVLLPRDLKGRPDEVKSKLLVDFDPLRCFIKDLEKEFSTTFKVWYDLLGGDAIGLTWGESYSSKKRKQEEVVEEHGHDPSKLLKSVGDAGKAFVKSIYFLKPPKCLDPFNFSGNCKGIQIYVHRLHASMEFAGKIKCHLTLMLRKFPLRFFLPHSKFTVLPLIDEDEHICHVLTRMGCNNQTDEKLFVTPQPRVTFCQRGKSKNGSFVSTLRNHFHEFIHASMDEHRTCLRNTMQKLFGRKSDSPSENETSLPLQSTTEE 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0176 1197 Pfam Nrap protein domain 6 895 1034 IPR035371 -
Lele52g0176 1197 PANTHER NUCLEOLAR RNA-ASSOCIATED PROTEIN 2 1035 IPR005554 -
Lele52g0176 1197 Pfam Nrap protein PAP/OAS-like domain 234 375 IPR035367 -
Lele52g0176 1197 Gene3D - 208 378 - -
Lele52g0176 1197 MobiDBLite consensus disorder prediction 1175 1197 - -
Lele52g0176 1197 Pfam Nrap protein domain 1 92 220 IPR035082 -
Lele52g0176 1197 FunFam Nucleolar protein 6 208 378 - -
Lele52g0176 1197 Pfam Nrap protein nucleotidyltransferase domain 4 560 699 IPR035369 -
Lele52g0176 1197 Pfam Nrap protein PAP/OAS1-like domain 5 731 880 IPR035370 -
Lele52g0176 1197 Pfam Nrap protein domain 3 380 533 IPR035368 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0176 Lele-ChrLele52 1048549 1059126 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0176 52 1048549 1059126 Lele53g0052 53 407137 407976 CCT
Lele52g0176 52 1048549 1059126 Lele54g0053 54 449670 450517 CCT
Lele52g0176 52 1048549 1059126 Lele55g1445 55 20663817 20664654 CCT
Lele52g0176 52 1048549 1059126 Lele56g1380 56 16919213 16920045 CCT
Lele49g0160 49 959334 967794 Lele52g0176 52 1048549 1059126 hybridization
Lele50g0178 50 1040212 1050913 Lele52g0176 52 1048549 1059126 hybridization