Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0172 ATGGACCTGATGAGAGGTTTAGATAAGGAAATAGAGATGCCATTACCGACCACTTCAGGTTATAATCCCTCCAATAATAGGGACTCATCTTCTTCTCCAACTCTAGCTTCAACAGCAGCCGAAACCAGTAGTGATCAACATCCTCAAACTAATTCTGACCACTATCATCTTCATCATCCTGCTCCTTCTCTGCCATCTAACCCACTTCAGCAATCGCAGAGAAACACAGGAGATCCAGATCCGCCCAGCGTAACAGCGATCACAACAGTTGCTGGCAGATCAAACCCAAGACCAGCAACAGCGACGACAATTAGGTACAGAGAATGCTTGAAGAATCATGCGGCGAGCATGGGAAGACACATCGTGGATGGATGCGGCGAGTTCATGCCAAGCGGGGAAGAAGGAACTCCACAATCCTTGAGATGTGCCGCTTGTGACTGCCACCGGAATTTTCACCGGAAAGAGACCGAAGGTGAACCTCAAACTAATGTTCTCAATTACTACACCTACCCTCCCAGCAAAAGCAATAACGGACAAAGTAGGATTCTTTCTCCTCAGTTTCCGCCACACCCTCCTCTAAATCACCATCATCATCAACATATGAGATTTTCAGGAGGGTCGTTCCCGCCGTTGATGATGGCCTTCGGCGGCGGAGGCGGGGCGGCGGAGTCTTCAAGCGAAGGTCTGAACATGTTTCAGTGTAATGATGCGGGAGGGCAAGGGTCAGTGCAGGCGGCAGCGTCATCGAGGAAGAGGTTTAGGACCAAGTTTAGCCAGGAGCAGAAGGATGGAATGATGGAGTTCGCCGAGAAGTTGGGATGGAGGATCCAGAAACATGACGAACAAGAAGTACAGCAGTTTTGTAACCAAGTGGGTGTCAAACGGCAGGTTTTCAAGGTTTGGATGCACAATAACAAGCAGGCCACGAAGAAGAAGCAAATGTAA 945 0.491 MDLMRGLDKEIEMPLPTTSGYNPSNNRDSSSSPTLASTAAETSSDQHPQTNSDHYHLHHPAPSLPSNPLQQSQRNTGDPDPPSVTAITTVAGRSNPRPATATTIRYRECLKNHAASMGRHIVDGCGEFMPSGEEGTPQSLRCAACDCHRNFHRKETEGEPQTNVLNYYTYPPSKSNNGQSRILSPQFPPHPPLNHHHHQHMRFSGGSFPPLMMAFGGGGGAAESSSEGLNMFQCNDAGGQGSVQAAASSRKRFRTKFSQEQKDGMMEFAEKLGWRIQKHDEQEVQQFCNQVGVKRQVFKVWMHNNKQATKKKQM 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0172 314 MobiDBLite consensus disorder prediction 1 99 - -
Lele52g0172 314 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 76 307 - -
Lele52g0172 314 Pfam ZF-HD protein dimerisation region 104 156 IPR006456 -
Lele52g0172 314 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 250 307 IPR006455 -
Lele52g0172 314 FunFam Zinc-finger homeodomain protein 2 238 311 - -
Lele52g0172 314 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 106 155 IPR006456 -
Lele52g0172 314 MobiDBLite consensus disorder prediction 64 99 - -
Lele52g0172 314 MobiDBLite consensus disorder prediction 17 50 - -
Lele52g0172 314 SUPERFAMILY Homeodomain-like 240 311 IPR009057 -
Lele52g0172 314 Gene3D - 236 311 - -
Lele52g0172 314 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 105 155 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0172 Lele-ChrLele52 1019283 1020227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0172 91 314 ZF-HD Transcription Factor Family AT2G18350 51.982 1.23e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele52g0172 ZF-HD_dimer 9.4e-31 No_clan