Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0168 ATGGGTACTAATACCGGTGAAGTTGCACACACGCTACCAAATCCTTGCTCGTTCAAGGTGCATCATACAATGTGCATGGAACTCATGAGATTAGTCGATAGAATCTCAAAGATATTACCAGATATAGAGGCAACACGCCCTCGATGCTCATCGGGAATGCAGTCTCTGTGCTCTCTGAACACTGCCATTGATAAGGTCAAACTCATTCTGCAACATTGCTGTGATTGTAGCAAACTATACCTGGCATTGACGGGACATACGGTCCTCTTAAGATGCTTAAAGGCAAGAAATTCGTTAGAGAAAAGCTTGGACAAAATTCACAGTATGGTTTCAGTTATGTTGGCGGCAGAGATTTCTCAAATAATTGATGATCTGGAACGGGCAACATTTGTTCTGGACTCGTCCGAAGAAGAGGCTGGGAGGGTTGTGAGAGAACTGCTCCAGAAAAGTCCTTCGGCATCCGATTCAATGAAAGATTCTGAGATTAAATCTCTTCAAATTGCAGCAGCAAGACTTAATATTACATCCCCAAAGGCCATCTTAATAGAGAAAAGATCTATTAAGAAATTGCTCAATAAACTTGGGCCAAATGAACCGACGAAAAAGATGATCTTGAAGTATCTTTGGTATCTATTGAAAAAGCATGGAAACCATATCATTGGAGGTCAAATTGGAAAGATCCATGCTCTAAGTGGAGAACCAATACTTGCAACTAATAAATCAAGTCACAGTCCTTCTGTTCAACGTAGAGCTGTCTCCCCTGAGGAATACAAGTGTCCAATATCTTCAAAGTTGATGTATGATCCTGTTGTCATTGCTTCTGGGGAGACATATGAAAGGATGTGGATACAAAAATGGTTTGATGAAGGTCATGATATATGCCCAAAAACTGGGAAGAAATTGGCCAATATGTCAGTGACACCAGACATTGCAATGAAGGATTTAATATCAAAATGGTGCAGAGATAATGGAGTCATGATTACTGATCCTAGCAGGCGAGCAGCAAAGTTCAGTTCACGAGAATCTTCCTTTGCTTCCATTAGGAGCTTTGACGTTTCATTGAATAAATTAAACTTGCCAGTGGATCTTAGTATCGTGTCACTTGGATCAACAGATAGTTATGATTCAGATTCCTCACAGACTGTAACTACTCATCACTTAAATTTTATGATCATGAGGACCAACGATGATTCTTACAGTCATCAGTCTCATGCACACGTAGATGGTGCAGATTCAATGCTTTTGTCTCAGTTCCCTGATCTTCAATGTTGCCAAGTCATCGAAGAAGATTGTTTGAAAAGCAATTGCCAAGCTTCTTGTTCTTCGTCGGCTGAGGGTTTCTCTGAATCACTCGTCCAATTTCTGAACAATGCATATGACCTGCAAGACATAAAAGCTCAGAGAGCGGGAATGCAGCTGTTCTTAGAATTTATAAACAAGCACAGAAACAGCCTAACGTATCTAAGCGAGGATTCATTCAGCGTATTGGGCAATCTTCTTGACTCTGAGGTTAAAGGAGAAGCACTTGCCATAATGGAAAAATTGTCCGAGTGTGAGCATAGTAGAACTAAAATTGCAGCATCCAGTGCACTATCTGCCATTTTAAAGATTCTTGACTCTGAGAGCAGAGAGCTTCAACAACAATCTATTCGAATAATCTACAATTTGTCGTTCAACAGCGAGGCTTGTTTCCACATGGCATCTTTCCAGGGCATCATCCCAGGATTATTACTACCATTTTTCAAAGATGGGACTTCGTTAAGATACTGCATATGCGTATTGAAAAACCTTTGTGATATAGAAGAGGGTAGGGTTTCTGTTGCCAAAACAGAAGGATGCATATCTGCTACTGTTGAAATTCTTGAGATTGACAGTGACGAGGAACAAGAACATGCACTGGCTGTCTTACTCTCTTTATGCTCTCTGAGTTTGGATTATTGTCAGCTGGTCATGAGACAAGGGGAATGTGTTATCACTTCCCTTTTCTTTATTGCCAAAAATGGGAAAGACAAAGGAAAGGCGAGTGCATTGAAGTTGCTCGGACTTTTGACGGATATTGTAAGTGTTGAAAATGAAGAATGCTTTATATCAACTCCCAGCACTTCTCAAGAACCTAACAATCATCCTCAACAAAACAAATCATCAAGAATATCTGCTCCTTTCAAGAAGTTTTTTGTTTCCTGCATTACATTAGCATCTGTTAAGACTTTCCAGCACGTAGCTGCTGTCTATCTCTCTCATAATGTTGTGTACATCTTGGTTGATTCTATTAAGAGTAACACAATTGAGGTTTCCGCCGATGGTTGA 2307 0.4023 MGTNTGEVAHTLPNPCSFKVHHTMCMELMRLVDRISKILPDIEATRPRCSSGMQSLCSLNTAIDKVKLILQHCCDCSKLYLALTGHTVLLRCLKARNSLEKSLDKIHSMVSVMLAAEISQIIDDLERATFVLDSSEEEAGRVVRELLQKSPSASDSMKDSEIKSLQIAAARLNITSPKAILIEKRSIKKLLNKLGPNEPTKKMILKYLWYLLKKHGNHIIGGQIGKIHALSGEPILATNKSSHSPSVQRRAVSPEEYKCPISSKLMYDPVVIASGETYERMWIQKWFDEGHDICPKTGKKLANMSVTPDIAMKDLISKWCRDNGVMITDPSRRAAKFSSRESSFASIRSFDVSLNKLNLPVDLSIVSLGSTDSYDSDSSQTVTTHHLNFMIMRTNDDSYSHQSHAHVDGADSMLLSQFPDLQCCQVIEEDCLKSNCQASCSSSAEGFSESLVQFLNNAYDLQDIKAQRAGMQLFLEFINKHRNSLTYLSEDSFSVLGNLLDSEVKGEALAIMEKLSECEHSRTKIAASSALSAILKILDSESRELQQQSIRIIYNLSFNSEACFHMASFQGIIPGLLLPFFKDGTSLRYCICVLKNLCDIEEGRVSVAKTEGCISATVEILEIDSDEEQEHALAVLLSLCSLSLDYCQLVMRQGECVITSLFFIAKNGKDKGKASALKLLGLLTDIVSVENEECFISTPSTSQEPNNHPQQNKSSRISAPFKKFFVSCITLASVKTFQHVAAVYLSHNVVYILVDSIKSNTIEVSADG 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0168 768 Gene3D - 438 765 IPR011989 -
Lele52g0168 768 Pfam U-box domain 254 323 IPR003613 GO:0004842|GO:0016567
Lele52g0168 768 ProSiteProfiles U-box domain profile. 252 326 IPR003613 GO:0004842|GO:0016567
Lele52g0168 768 PANTHER U BOX DOMAIN-CONTAINING 23 683 - -
Lele52g0168 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 328 IPR013083 -
Lele52g0168 768 SUPERFAMILY ARM repeat 451 696 IPR016024 -
Lele52g0168 768 SMART Ubox_2 256 319 IPR003613 GO:0004842|GO:0016567
Lele52g0168 768 CDD RING-Ubox_PUB 257 299 IPR045210 -
Lele52g0168 768 SUPERFAMILY RING/U-box 253 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0168 Lele-ChrLele52 990669 994237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0168 8 720 U-box Gene Family AT4G36550 35.784 7.21e-128 396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0149 49 897070 899292 Lele52g0168 52 990669 994237 hybridization
Lele50g0168 50 986601 989336 Lele52g0168 52 990669 994237 hybridization