Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0165 ATGAATGATCTGATGACGAAATCATTTCTAAGTTATGTTGAACTGAAGAAACAGGCCCGAAAGGACCTTGAAGCCGATCTTGACATCGAAGCGGGGCAATTCAACCCCATTGAAGACCAAAACCTCTCTCAGTTCTTTGAAGAAGTTGATGCCATCAAATACGAAATGGAAGAGACTACTAATCTCTTATTGGATCTTCAACAACTGAATGAAGAAACAAAATCAACCCACAGCACGAAAGTTCTTCGTGGGCTCAGAGACCGAATGGAGTCAGACATGGTCACCATTCTTCGCAAAGCAAATATCATCAAGACAAGGCTTGAATCGCTTGACCAATCCAACGTTAAAAATCGCAAAATGTCAGAATCCTTTAAAGAAGGAACCCCAGTCGATAGAACGAGAATATCAGTCACAAGTGGCCTAAGAGTCAGGCTCAGAGACTTGATGAATAAGTTTCAATCCCTGAGAAACAAAATTCTATCTGATCACAAGGAGGAATTAAAGAGAAGATACTACCCTGCAACAGGGGAGATACCAAGCGATGAAATAGTGGAGAAGATGGTTTCTGGGAGTGTGAAAGTTGATTTTTTCAAAACAGAGGCTGATAATATGACGGCTGAGACTCAGGTTAGGCACCAGGCTGTGATGGATATACAGAGAAGTTTGGATAAACTTCACAAGGTTTTTCTTGACATGGCTATTATTGTGGAGACACAAGGCGAGAAAATGGACAACATTGAAGATAATGTAGCCAATGCCAGGAGCTTCGTTCATGGTGGGACTAATAGTCTTTACTATGCTAATCAGATGAGGAAGAACAAAAAATGGGCATGGTGGGTTTGTGCTGTGGGACTGATTATTCTTTTGGTATGCTTAATTGCACTCTTGGCTTCTTGA 897 0.4125 MNDLMTKSFLSYVELKKQARKDLEADLDIEAGQFNPIEDQNLSQFFEEVDAIKYEMEETTNLLLDLQQLNEETKSTHSTKVLRGLRDRMESDMVTILRKANIIKTRLESLDQSNVKNRKMSESFKEGTPVDRTRISVTSGLRVRLRDLMNKFQSLRNKILSDHKEELKRRYYPATGEIPSDEIVEKMVSGSVKVDFFKTEADNMTAETQVRHQAVMDIQRSLDKLHKVFLDMAIIVETQGEKMDNIEDNVANARSFVHGGTNSLYYANQMRKNKKWAWWVCAVGLIILLVCLIALLAS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0165 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Lele52g0165 298 PANTHER SYNTAXIN 45 287 IPR045242 -
Lele52g0165 298 Pfam SNARE domain 242 290 IPR000727 -
Lele52g0165 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Lele52g0165 298 SUPERFAMILY t-snare proteins 40 260 IPR010989 GO:0016020|GO:0016192
Lele52g0165 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Lele52g0165 298 Gene3D - 197 297 - -
Lele52g0165 298 Pfam Syntaxin 44 240 IPR006011 GO:0016020
Lele52g0165 298 Gene3D - 38 170 - -
Lele52g0165 298 SMART tSNARE_6 200 267 IPR000727 -
Lele52g0165 298 Coils Coil 56 76 - -
Lele52g0165 298 CDD SynN 42 191 IPR006011 GO:0016020
Lele52g0165 298 CDD SNARE_syntaxin1-like 206 264 - -
Lele52g0165 298 FunFam Syntaxin 132 198 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0165 Lele-ChrLele52 983735 984631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0165 1 298 SNARE and Associated Proteins AT2G18260 61.238 3.49e-131 373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0146 49 888688 889716 Lele52g0165 52 983735 984631 hybridization
Lele50g0166 50 979047 981104 Lele52g0165 52 983735 984631 hybridization