Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0133 ATGACCAGCTCTTCCGCTGCTTCTCGCAAGGCTTTGAGTAAGATTGCCTGCAATAGGCTCCAGAAGGAACTCGTGGAGTGGCAGGTCAATCCCCCCACCGGTTTCAAGCACAAAGTCACCGATAATCTCCAAAGGTGGGTTATTGAAGTGACTGGAGCTCCGGGTACACTTTACGCCAATGAAACCTACCAACTTCAGGTCGACTTTCCCGAGCACTACCCCATGGAAGCTCCACAGGTTATATTTTTGCACCCCGCTCCACTACATCCCCATATCTATAGCAATGGGCACATTTGTTTAGATATACTGTATGACTCATGGTCCCCGGCCATGACAGTTAGTTCCATCTGCATCAGCATTCTCTCAATGCTTTCAAGCTCGACAGTAAAGCAACGCCCTGAAGATGATGACCGCTATGTAAAGAACTGCAGAAATGGTAGATCTCCTAAGGAGACAAGGTGGTGGTTCCATGACGATAAAGTAAATCTTCTAGGAATTGTTTGCATACGCATATTATTGATCGTTATTACAGCGTCTCCGAACACTGGGCCGGCTTAG 558 0.4749 MTSSSAASRKALSKIACNRLQKELVEWQVNPPTGFKHKVTDNLQRWVIEVTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPEDDDRYVKNCRNGRSPKETRWWFHDDKVNLLGIVCIRILLIVITASPNTGPA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0133 185 FunFam probable ubiquitin-conjugating enzyme E2 16 13 161 - -
Lele52g0133 185 SMART ubc_7 18 161 - -
Lele52g0133 185 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 15 139 - -
Lele52g0133 185 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 165 IPR000608 -
Lele52g0133 185 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Lele52g0133 185 SUPERFAMILY UBC-like 6 126 IPR016135 -
Lele52g0133 185 CDD UBCc 17 117 IPR000608 -
Lele52g0133 185 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Lele52g0133 185 Gene3D Ubiquitin Conjugating Enzyme 15 161 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0133 Lele-ChrLele52 779689 783927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0133 12 124 Miscellaneous Gene Families AT1G17280 28.814 9.15e-07 45.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0133 52 779689 783927 Lele54g0545 54 11893061 11894809 CCT
Lele52g0133 52 779689 783927 Lele56g0889 56 7479772 7481399 CCT
Lele49g0114 49 702248 704701 Lele52g0133 52 779689 783927 hybridization
Lele50g0128 50 783338 785853 Lele52g0133 52 779689 783927 hybridization