Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0131 ATGGGAAGAGGAAAGCTTGAGATCAAGCCGATCGAGAACCCTACAAACAGGCAGGTCACCTTCTCCAAGCGACGTAATGGCATCTTCAAGAAAGCTCATGAGCTCAGCGTTCTCTGTGACGCTAAGGTCTCTCTCATCCCGTTCTCTAAAAACAACAAGATGCGAGAATACGTCACCCCTGGCCTTACAACGAAGAAGATGATTGATCAATACCAGAAGGCGTTGGGGAGTGTTGGTTTGTGGTGCGCCCACTACGAGGTTGATAAGTGA 270 0.4889 MGRGKLEIKPIENPTNRQVTFSKRRNGIFKKAHELSVLCDAKVSLIPFSKNNKMREYVTPGLTTKKMIDQYQKALGSVGLWCAHYEVDK 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0131 89 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele52g0131 89 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Lele52g0131 89 Coils Coil 87 89 - -
Lele52g0131 89 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele52g0131 89 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Lele52g0131 89 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lele52g0131 89 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 73 - -
Lele52g0131 89 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele52g0131 89 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele52g0131 89 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele52g0131 89 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0131 Lele-ChrLele52 775044 775389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0131 1 86 MADS-box Gene Family AT3G54340 61.628 2.83e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele52g0131 SRF-TF 2.1e-24 No_clan