Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0125 ATGGATAAGCCTCACCACCTCCTGCAGGCTTCCCCCATGGACAAGCCCTCTCTTCCCGATGCTCAAAGACCCACCTTTGACCCTTCTGACCAGACTCTCCACCTGATGACCGTCGATCCCTGCCGGACTGCCGGGGATGCCCAGGATTCCCAGCTCCTCCCCGCCCCGGTCCCACTTGCCCGCGATGCTGATGTGGGCTCGGCGCAGCATGGTTGCTTGCCCGACATGGAACTCAAGGCTGACGTGAAGGTTGCGGACGGCAGCTCGGGGAAAAGGAAGCGAGGTCGGCCGGCCAGGGGTACTGCCAGGGAACCGCCATTGAAGAAGAATAGGGACGAGGAGGATGTCTGTTTCATTTGTTTCGATGGTGGCAGCCTTGTTCTCTGTGATCGCCGGGGTTGTCCTAAAGCATACCATCCCGCATGTATTAAGCGAGACGAGGCATTCTTTCGTTCCAAGGCCAAATGGAATTGCGGTTGGCATATATGTAGCGGTTGTCGGCGGGCATCCCACTATATGTGCTATACGTGTACATATTCTTTGTGCAAGGGTTGTATAAAAGGCGCTGATTATCTGTGTGTCAGAGGGAATAAAGGTCTGTGCGGGATATGCATGAGGACTATAATGCTCATTGAGAACAGTGCCCAGGGAAACAAGGAAATGTGTGAAGTGGATTTTGACGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGTTGTACTTGAAAGAGAAGCTATCTTTAACATTAGATGAGATCCTTCGAGCTAAAACTCCATGGAAAGGAGCTGCTGCTAATGGTTCTAAGTTAGAAATGCCTCATGAAATTCATATCCATAAAGATGACAAGGGTTCCGGGTCAGAGAACTCCTGTATAGACATAGAATCAAATAATTTAGAAAATAACCATTGTAATAGACAGCCAAGGCTTCTGAATAAGGAGAACTGCCCAAATATAAACACTTCAGCTGGTGATAAAGATGCATCTATGGCTGAACGAACAAAATGGGCATCGAATGAGCTTTTAGAGTTTGTTGCACATATGAAAAATGGCGATGCATCTCTCCTATCTCAACGTGATGTTGAGGCTCTTTTGGTGGAGTATATAAAGAAAAACAATCTTTATGATCCTCAACAGAAAAGCCAAGTTGTTTGTGATTCAAGGCTAGTCAATTTGTTCAGAAAAGAGCGCGTAGGTCAGATTGAAATGTCAAAGCTTCTTGAATCCCATCTTCTTATGAAAGATGATGCCTCTGCCAATATTATTAGGTCAGGACCAATTGATGATGTTGCTAGTCAGATGGAGGTTAATGTCAATGATAATAAACATAAAACACGTAGAAGGGCTGAAGGGCTGCTTGATAATCCGGACGCATATGCTGCAATAAATGCTCACAACATTAACTTGATTTACTTGCGGCGTAATCAGATGGAGAATATAATTGAAGATGCTGAGAACTTCAAGGACAAGGTTGTTGGTTCAATTGTGCGGATAAGAATCTCCAGCAGTGATCAAAAGCAAGAGATGTATAGGCTTGTACATGTTATAGGTACCAGCAATATTGCTGAATCTTACAATATTGTCTCACGAACAACAGGCATTGTGCTTGAAATTTCTAATTTAAACAAGAAAGAGGTCATAAAGATAAGTGAGATTTCGGATCAGGCTTTCTCTGAGGATGAATGCAAACGGTTGCGCCAGAGCATAAAATATGGGTTTTCAAAAAGATTGACTGTGGGAGAGATTCTGGACAAGGCATTGACACTTCAAGCAATGAGAATTAATGATGTAAGCTCTTCCTCTTTATCATTACATATGTGTTTTAGAAACATGTTGCTGGAAGACGAGATGCTGCAGCTTAACCATCTTCGTGATAGAGCAAGTGAAAAGGGACATAGAAAAGAATATCCTTTACTATCTATAACTTTGCTTCTTCTTTTTTTAACTAGACCGTGGGTTACTATTATTTTAGGACTTCTGAGCAGGCATGTAAAGCTAGCTGTTCAGAAGATTATAGCTGTTCCTTTGTTGAGCCAGTGTGTGGAGAAGTTGCAGTTACTGAACTCACCTGAGAAACGACAGCAAAGGCTGCAAGAAATTCCAAAAGTATACTCTGATCCAAATATGGATTCAATGTTTGACTCTGATGAAGATGCTGAAAAGCCAGATGAAAGGAAGCAAGATGACAATATACAGTCCAAAAATTATGGATTTAATAGAAGAGAGAGGGAGCCTAGTTCGCCAAGAAGTCAGGATGGTGTCCTAAATGATGTTGGATGCAGAGCACTAGACTTTTTGGTCACTGCCCATGAGCAGATTGAGAATACAAGTATAATGAAGAACCAGAACAGCCCAAATGATGCAGCAAATGGTGATAGCAATAATTTAGTAGTGGCAACGTCAGGGAAATCTTGTGTTGCGTCAGATCCTCCATCTTTGCCTCTCTCTACAGGAAAGGAGCAGCCATTTAATGATCTTGCAACTGATAATCTATGGCACTATTGGGATCCATCTGGGAAGATTCAAGGACCATTTTCTTTGCTGATGTTGTGTAAGTGGAATGCAAGCGGGCTTTTCCCTCCTGATCTCAGAATATGGAAGAACACTGAAAACCAAGATGACTCTATATTGTTAACTGATGTATTAAGTGGGAAGTGTACTGAAAGTGCGTCATTACCATGCAATAGCCAGCTACTATCTTTAGGGATCAAGGCTGCACATGGTGACGAAGATGATATTGATTTGCCAAGTTGCGCTCCTGTAACCAGTTCCTCAACTTGCATAGATTCTACATCTACTATTGTTCCTGCAACAAAAACATCACCGAAAAACTCACAAATTGGTTTTCTGGAATTGCCTGGTGATAACTCTAATCCAACTCATTCTGAACGTACGGGTCAGTCTGCTGAAAATAAACATTCCTGGAGTACTGCTTCCAGCTTAGTTGGTGGTGGGACACCACTTCCTGAAGTGACTGTTGAGTGGAGAACATGTTCACCAGCTCCGCCTAATCCTTCTGTTGAGGAATGGGACTCCAATCTTGTCTCTGCATCTTCATTGAAGCCGGCTGAAACTGTTGGCGATTGTACTGCTACTCCATCTTCAATATGCGATCAACTGAATCATTCTTCCCCATCCAATCCAGCCTGTAATACCACTACGTGGCAGGCAATTATTGATGAACAGAATGATTTTGGCTCATTTGATGAAACAGTTTCAGATTTGTTGGCAGAAATGGAGGCAATGGGGTCTCTTGGTGGCTTGGAATCTCCCACATCGATCATGAAATGTGGTGAGGAATTGACTGAGGGTTCTAATTGTCTCAGCCCTACAGAGGGGCTTAGCCCAATGCCTGATGCTGGTAAAGGCGATGCACTGAGCTCCACGGGAGATTTACAATTTCCCTCTCAATCCACAGCACCTGAGGTACCATTATGCCAGCCAGATGTACATTACCATCAAAGAATCTCTGGAGGGCATTCTGGCAGAAGTTCTGAAGTAGCTGGCACGAAAAATAGTGTTTCAGGTAATCAATGGAAGTCAGGTTCAGGTATTCCATCCACAGCAACCTGGGCCCTGCCTACAGATACTACTTGGAGACTCGGGCAAGACAGCAGAAGTGGTTGGGAGGCATCTCAGGTAAATATGAACTTGGGCTGGGGTGGAATGGATAATAAAGGAAATGCAAACGCAAGTTGGGGAGTAGGACAGGGGACAGTGCAGGAAAACAGGAATATAAATTCATACACTTCCGTTGGAACTCCAGGCGGTTACGGGAGCCAATCTAGATATAGCAGCGATCGATTTTCTCCTCGTGGTAGGGATATGAATTCTGGTAGGGGTAGACACGTCTGGAACAGGCAATCATTTGGTGGGGGAACTGGAGGCTCCCAGAGGCCTGCGCCCAGAGGGCAGCGAATTTGTAAATTTTACGAAAGTGGGTACTGTAAGAAGGGAGCATCATGTGATTACTTGCACCCATGA 3987 0.4417 MDKPHHLLQASPMDKPSLPDAQRPTFDPSDQTLHLMTVDPCRTAGDAQDSQLLPAPVPLARDADVGSAQHGCLPDMELKADVKVADGSSGKRKRGRPARGTAREPPLKKNRDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSGCRRASHYMCYTCTYSLCKGCIKGADYLCVRGNKGLCGICMRTIMLIENSAQGNKEMCEVDFDDKSSWEYLFKVYWLYLKEKLSLTLDEILRAKTPWKGAAANGSKLEMPHEIHIHKDDKGSGSENSCIDIESNNLENNHCNRQPRLLNKENCPNINTSAGDKDASMAERTKWASNELLEFVAHMKNGDASLLSQRDVEALLVEYIKKNNLYDPQQKSQVVCDSRLVNLFRKERVGQIEMSKLLESHLLMKDDASANIIRSGPIDDVASQMEVNVNDNKHKTRRRAEGLLDNPDAYAAINAHNINLIYLRRNQMENIIEDAENFKDKVVGSIVRIRISSSDQKQEMYRLVHVIGTSNIAESYNIVSRTTGIVLEISNLNKKEVIKISEISDQAFSEDECKRLRQSIKYGFSKRLTVGEILDKALTLQAMRINDVSSSSLSLHMCFRNMLLEDEMLQLNHLRDRASEKGHRKEYPLLSITLLLLFLTRPWVTIILGLLSRHVKLAVQKIIAVPLLSQCVEKLQLLNSPEKRQQRLQEIPKVYSDPNMDSMFDSDEDAEKPDERKQDDNIQSKNYGFNRREREPSSPRSQDGVLNDVGCRALDFLVTAHEQIENTSIMKNQNSPNDAANGDSNNLVVATSGKSCVASDPPSLPLSTGKEQPFNDLATDNLWHYWDPSGKIQGPFSLLMLCKWNASGLFPPDLRIWKNTENQDDSILLTDVLSGKCTESASLPCNSQLLSLGIKAAHGDEDDIDLPSCAPVTSSSTCIDSTSTIVPATKTSPKNSQIGFLELPGDNSNPTHSERTGQSAENKHSWSTASSLVGGGTPLPEVTVEWRTCSPAPPNPSVEEWDSNLVSASSLKPAETVGDCTATPSSICDQLNHSSPSNPACNTTTWQAIIDEQNDFGSFDETVSDLLAEMEAMGSLGGLESPTSIMKCGEELTEGSNCLSPTEGLSPMPDAGKGDALSSTGDLQFPSQSTAPEVPLCQPDVHYHQRISGGHSGRSSEVAGTKNSVSGNQWKSGSGIPSTATWALPTDTTWRLGQDSRSGWEASQVNMNLGWGGMDNKGNANASWGVGQGTVQENRNINSYTSVGTPGGYGSQSRYSSDRFSPRGRDMNSGRGRHVWNRQSFGGGTGGSQRPAPRGQRICKFYESGYCKKGASCDYLHP 1328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0125 1328 MobiDBLite consensus disorder prediction 700 756 - -
Lele52g0125 1328 CDD SWIB-MDM2_like 337 412 - -
Lele52g0125 1328 SUPERFAMILY CCCH zinc finger 1303 1327 IPR036855 GO:0046872
Lele52g0125 1328 MobiDBLite consensus disorder prediction 1 50 - -
Lele52g0125 1328 MobiDBLite consensus disorder prediction 1251 1268 - -
Lele52g0125 1328 ProSiteProfiles SWIB/MDM2 domain profile. 331 414 IPR003121 -
Lele52g0125 1328 MobiDBLite consensus disorder prediction 1154 1192 - -
Lele52g0125 1328 MobiDBLite consensus disorder prediction 939 987 - -
Lele52g0125 1328 SMART rtf1 462 572 IPR004343 GO:0003677
Lele52g0125 1328 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 921 1328 - -
Lele52g0125 1328 Pfam GYF domain 833 873 IPR003169 GO:0005515
Lele52g0125 1328 Coils Coil 611 631 - -
Lele52g0125 1328 CDD PHD5_NSD 116 161 - -
Lele52g0125 1328 SMART swib_2 332 417 IPR019835 -
Lele52g0125 1328 MobiDBLite consensus disorder prediction 83 107 - -
Lele52g0125 1328 SUPERFAMILY FYVE/PHD zinc finger 111 161 IPR011011 -
Lele52g0125 1328 SMART PHD_3 116 162 IPR001965 -
Lele52g0125 1328 Pfam SWIB/MDM2 domain 339 412 IPR003121 -
Lele52g0125 1328 MobiDBLite consensus disorder prediction 1104 1139 - -
Lele52g0125 1328 MobiDBLite consensus disorder prediction 1251 1304 - -
Lele52g0125 1328 Pfam Plus-3 domain 467 570 IPR004343 GO:0003677
Lele52g0125 1328 SUPERFAMILY Plus3-like 463 591 IPR036128 GO:0003677
Lele52g0125 1328 MobiDBLite consensus disorder prediction 939 984 - -
Lele52g0125 1328 Gene3D - 463 592 IPR036128 GO:0003677
Lele52g0125 1328 Gene3D SWIB/MDM2 domain 323 421 IPR036885 -
Lele52g0125 1328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 204 IPR013083 -
Lele52g0125 1328 ProSiteProfiles GYF domain profile. 830 884 IPR003169 GO:0005515
Lele52g0125 1328 SUPERFAMILY SWIB/MDM2 domain 335 413 IPR036885 -
Lele52g0125 1328 SMART gyf_5 831 886 IPR003169 GO:0005515
Lele52g0125 1328 ProSitePatterns Zinc finger PHD-type signature. 117 177 IPR019786 -
Lele52g0125 1328 MobiDBLite consensus disorder prediction 715 749 - -
Lele52g0125 1328 MobiDBLite consensus disorder prediction 1159 1192 - -
Lele52g0125 1328 Gene3D - 832 888 IPR035445 -
Lele52g0125 1328 SUPERFAMILY GYF domain 829 883 IPR035445 -
Lele52g0125 1328 ProSiteProfiles Plus3 domain profile. 462 595 IPR004343 GO:0003677
Lele52g0125 1328 ProSiteProfiles Zinc finger C3H1-type profile. 1303 1328 IPR000571 GO:0046872
Lele52g0125 1328 FunFam Zinc finger CCCH domain-containing protein 19 106 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0125 Lele-ChrLele52 732276 738278 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele52g0125 Plus-3 8.5e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0105 49 658380 664415 Lele52g0125 52 732276 738278 hybridization
Lele50g0122 50 738927 747040 Lele52g0125 52 732276 738278 hybridization