Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0113 ATGTCGTCCGCCGGAGAAGGTGATCGCACTGCCGTTGATCAGCCGGCAGAGGAGCCTAAGCCAGGGACCAAGGAGAAGCCCAGGGTTCCAAAGGAGAAGAAGCCGAGGCAGGCGAAAACAGGGTCTCATCCTCCATATTTTCAGATGATTAAGGAGGCTTTATTGGCTATGAACGACAAGGGTGGCTCCAGCCCCTACGCAATAGCCAAGTACATGGAGGAGAAGCATAAGTCGGTTCTTCCTGGGAATTTCAGGAAGATGTTGGCTCTTCAGCTGAAGAACCAAGCTGCGAGAGGGAAGCTCATCAAGATCAAGGCTTCCTACAAGCTGTCCTCTGTGGCCGGCAAGGAGGAGAGGGACAGCACTGGCAGGGTCACAAGGTCCTCCACACAGAAGACTCAGCGCTCTAAGCGAAGCGCGCCTAAGAAAACTGAGACAGGTAAGAAGGCGAGGAAAAAGGTTGGGGTGAAGAAGACGAAGAAATCATCCACATCTACGAAGGCGAAGCAGCCCAAGTCTCTGAGATCTTCATCCAAGAGGGCCAGAAAAGTTACTGCGTCAGCTTCATGA 570 0.5281 MSSAGEGDRTAVDQPAEEPKPGTKEKPRVPKEKKPRQAKTGSHPPYFQMIKEALLAMNDKGGSSPYAIAKYMEEKHKSVLPGNFRKMLALQLKNQAARGKLIKIKASYKLSSVAGKEERDSTGRVTRSSTQKTQRSKRSAPKKTETGKKARKKVGVKKTKKSSTSTKAKQPKSLRSSSKRARKVTASAS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0113 189 MobiDBLite consensus disorder prediction 11 39 - -
Lele52g0113 189 Pfam linker histone H1 and H5 family 43 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele52g0113 189 PRINTS Histone H5 signature 29 50 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele52g0113 189 PRINTS Histone H5 signature 56 73 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele52g0113 189 PRINTS Histone H5 signature 130 144 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele52g0113 189 PRINTS Histone H5 signature 160 177 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele52g0113 189 Gene3D - 37 122 IPR036388 -
Lele52g0113 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 42 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele52g0113 189 SMART h15plus2 40 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele52g0113 189 PANTHER HISTONE H1 16 171 - -
Lele52g0113 189 MobiDBLite consensus disorder prediction 144 165 - -
Lele52g0113 189 MobiDBLite consensus disorder prediction 110 189 - -
Lele52g0113 189 MobiDBLite consensus disorder prediction 1 47 - -
Lele52g0113 189 CDD H15 42 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele52g0113 189 SUPERFAMILY "Winged helix" DNA-binding domain 40 117 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0113 Lele-ChrLele52 673963 674630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0113 29 115 Single Myb Histone (SMH) Gene Family AT1G72740 36.782 5.74e-09 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0097 49 595817 596472 Lele52g0113 52 673963 674630 hybridization
Lele50g0114 50 684980 685644 Lele52g0113 52 673963 674630 hybridization