Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0112 ATGCGAACTAGAAACGTTGATTCTTCCAAAACAGCGGCGGCTAAGAAGACACCGCCGACGAGGAAATCCGCATCTAAAAGTCCGGCGAACGCCCAATCCCCTCAGACCAAGCGCACCTCTACGATCAAAACTAGGCAGGCAAAGAAGAACGAGGCCTCGCCCTTACAAAACACAAGCTTTGATGAGGAACCGGAGCGATCATCTGAGGAGGCACAAGAAGCGGCTGATGCTTCTCAGGTGACACCAGAGACAAAAGTTGTTACAGCTGCAAAGTCAACACCAAAGAGGACGCCAAAGAGAGCAGTGGGAAGACCTAGGAATTCAACTAAAGCTGTTACGACCCGGGAACAGGAAGAACAAGTGGAGGCAATAACTGATGAAACACCGAAAGTGGATAATATTGAAGTAGCTGAGAAATTGGAGGAGCCTCTAAATGTTGAGGTAGTCAAAGCAGATGAAATTGAAAATAAAGAAGTGGGGGAACAAGGTGTTGAGTTTGTTAGACAATCTGCAGGGAATGAACAACATCCCAAGGAAGGAGATGAGTGTAATGCTGATAGTGCTTGTGAATCAGCGGCGAAGAAAAGAGACTTAGTTGAAGCTGTAGTATCTGCCTCTCAAGGTGTCCCTATTTTGTTGAATCAAGAAGAACCTACCATGGTGGAGCTCTCTAAATCTTTGGAGAATGAAGAACCCACTGATGCTAAAGAAGGAGAACAAACAAATGAAGAGGATGGGGAAAACGCATTAGAAAAATCAACGAAAGAAGAGACAGCTAGTATTGGACATAAAGAGCAATTTAATGTCGATTCTGTCAGTATAGAAATGAAAGACCAGGGAGAGCAAGTGAAGGAAGAGGATGGAGAAAAAGAATCAGAAAAATCATTGGAAAAGGAGGGAGAAAAGGTGTTAGAGAAATCCATGCAAGAGGAGACAATTAATATTATACATAACCAGGAATCTAATACTGATTCTGTTGAGAAAGAAATGACAAACCAATTTCTGCAAAATGATGTTAAACCTGAAAAGGAGAATCCAAGTGGTGATCAAGGCACCGAGGGTTGTGGTGAAAGGCTAGATCATGAAGAACAAGTGGAAGAGGAGGTTGTTGAGGTTGATCCCGAGGAGACTCGTGAAGAAGCTGAGACATTGGATGAGGAACACAAGGAATTGTCAAGTATGGCGAAGGAGCGCAAGATTAAGAAGGAGAATGAAATATTTGTTGGTGGGCTTGATCGTGATGCTACAGAGGAAGATCTTAAAAAGGTTTTTGAGAAGATTGGGGAGATAGTTGAAGTCAGGTTGCATAAAAATTCTTCAACAAACAAAAATAAGGGCTTTGCATTCGTGAAATTTTCTTGTAAGGAACATGCAAAGAAAGCTTTGTCAGAAATGAAAAACCCCGTTATACGTGGTAAGCGATGTGGCACTGCACCCAGTGAGGATAATGACACATTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAGGACTATGGTGTTGAGGGTGTTGAAAGCATTACACTTGTCCCAGATGTTCACCATGAAGGACTAAGCCGGGGCTTTGCATTCCTTGAGTTCTCCTGTCATCATGATGCCATGCTTGCCTATAAGAGGCTTCAAAAGCCTGATGTAATCTTTGGACATGCTGAGCGAACCGTCAAAGTAGCCTTCGCTGAACCCGCACGAGAGCTGGATCCAGAGATTATGGCACAGGTGAAGTCTGTTTTTGTTGATGGTCTCCCTCCTCATTGGGATGAAGGCTGCATTAGGGAGCACTTTAAAGGTTATGGTGAAATTGTACGAATTGTACTTGCCCGGAATATGACCACTGCTAAGAGGAAAGATTTTGGATTTGTTGATTTCTCTACACATGAAGCCGCTGTAGCTTGTGTTGATGGTGTAAATAGTTCAGAATTTGTTGATGGAACACAAAAGACAAAAGTGAGAGCTAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGAGGCATGTGTGGTGGGTTCCGAATTGGTCATGCTCGGGGTGGAGCCTTTCCAAGATCTGCAAGGGGTTTTGGTCGTGGAGGACATGCTGTCAAGTTGGGAAATTTTAACAGGGATATAATTTTTTATCATGGAGGACACGGTCAAATTGGAAGAATGAGTTTCAGGAATGATCCAAATCTTAATAATGCATATCCAGATTTTCACCAGAGGCAATTCGGTGAAAGGATGATTCCTTTGAGGGGTGGACATTATGCAGGCGCACAAGGTGCTGCAGTTGATGGTCCATCTAGACCTCATCTTGATAGAGTACGGTATGGCACCCCTGAGAGAGGCCCTGGTGAACCTATTCCCCCAAGGATGCCTTTCTCCCCTGAAGGATGGTTTGACAGGCCTTTTATGGGAAGGCATATTGATGATCCATATCTTTATGAAGACAGTGTGCGTGGGGTGAAGCGGCCATATTATATGACTGACCCAGATCCTAATTACATGGGGCATGTTGGACTTCGTCCTCGACTGGATTATACAGATCCTGCTGTATTTCATGGCAGTCGTTACCATGCTGGCAGGGGACAGTACTCACATGATTATTATGGTGCTGATTATGGTGGAGATTCAATAATCTCTTGGTGA 2652 0.4363 MRTRNVDSSKTAAAKKTPPTRKSASKSPANAQSPQTKRTSTIKTRQAKKNEASPLQNTSFDEEPERSSEEAQEAADASQVTPETKVVTAAKSTPKRTPKRAVGRPRNSTKAVTTREQEEQVEAITDETPKVDNIEVAEKLEEPLNVEVVKADEIENKEVGEQGVEFVRQSAGNEQHPKEGDECNADSACESAAKKRDLVEAVVSASQGVPILLNQEEPTMVELSKSLENEEPTDAKEGEQTNEEDGENALEKSTKEETASIGHKEQFNVDSVSIEMKDQGEQVKEEDGEKESEKSLEKEGEKVLEKSMQEETINIIHNQESNTDSVEKEMTNQFLQNDVKPEKENPSGDQGTEGCGERLDHEEQVEEEVVEVDPEETREEAETLDEEHKELSSMAKERKIKKENEIFVGGLDRDATEEDLKKVFEKIGEIVEVRLHKNSSTNKNKGFAFVKFSCKEHAKKALSEMKNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVESITLVPDVHHEGLSRGFAFLEFSCHHDAMLAYKRLQKPDVIFGHAERTVKVAFAEPARELDPEIMAQVKSVFVDGLPPHWDEGCIREHFKGYGEIVRIVLARNMTTAKRKDFGFVDFSTHEAAVACVDGVNSSEFVDGTQKTKVRARLSNPLPKTQAVKGGMCGGFRIGHARGGAFPRSARGFGRGGHAVKLGNFNRDIIFYHGGHGQIGRMSFRNDPNLNNAYPDFHQRQFGERMIPLRGGHYAGAQGAAVDGPSRPHLDRVRYGTPERGPGEPIPPRMPFSPEGWFDRPFMGRHIDDPYLYEDSVRGVKRPYYMTDPDPNYMGHVGLRPRLDYTDPAVFHGSRYHAGRGQYSHDYYGADYGGDSIISW 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0112 883 CDD RRM_SF 486 564 - -
Lele52g0112 883 Gene3D - 484 568 IPR012677 -
Lele52g0112 883 MobiDBLite consensus disorder prediction 1 129 - -
Lele52g0112 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 582 664 IPR000504 GO:0003723
Lele52g0112 883 CDD RRM_SF 584 648 - -
Lele52g0112 883 SMART rrm1_1 485 565 IPR000504 GO:0003723
Lele52g0112 883 SMART rrm1_1 405 478 IPR000504 GO:0003723
Lele52g0112 883 SMART rrm1_1 583 658 IPR000504 GO:0003723
Lele52g0112 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 474 IPR000504 GO:0003723
Lele52g0112 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 486 554 IPR000504 GO:0003723
Lele52g0112 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 584 648 IPR000504 GO:0003723
Lele52g0112 883 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 235 860 - -
Lele52g0112 883 MobiDBLite consensus disorder prediction 111 129 - -
Lele52g0112 883 MobiDBLite consensus disorder prediction 1 61 - -
Lele52g0112 883 FunFam Heterogeneous nuclear ribonucleoprotein Q 484 568 - -
Lele52g0112 883 MobiDBLite consensus disorder prediction 366 381 - -
Lele52g0112 883 MobiDBLite consensus disorder prediction 73 91 - -
Lele52g0112 883 FunFam Heterogeneous nuclear ribonucleoprotein Q 569 719 - -
Lele52g0112 883 SUPERFAMILY RNA-binding domain, RBD 482 652 IPR035979 GO:0003676
Lele52g0112 883 MobiDBLite consensus disorder prediction 332 390 - -
Lele52g0112 883 Gene3D - 572 705 IPR012677 -
Lele52g0112 883 Gene3D - 371 483 IPR012677 -
Lele52g0112 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 482 IPR000504 GO:0003723
Lele52g0112 883 MobiDBLite consensus disorder prediction 242 263 - -
Lele52g0112 883 MobiDBLite consensus disorder prediction 215 308 - -
Lele52g0112 883 CDD RRM_SF 406 474 - -
Lele52g0112 883 MobiDBLite consensus disorder prediction 277 308 - -
Lele52g0112 883 SUPERFAMILY RNA-binding domain, RBD 400 476 IPR035979 GO:0003676
Lele52g0112 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 484 569 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0112 Lele-ChrLele52 664097 668801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0112 406 650 Eukaryotic Initiation Factors Gene Family AT2G23350 24.498 9.66e-15 76.6