Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0109 ATGAAGCGGGCAAGGAAATCGCTCAGGGTTTCGTGGGCTCCTGGATTTAATCTGTGTCAGGTGAAGTTGTTCTTATCTGAAGACTCCCCATCGAAAGTTTGCCAGACATCTCGAGATCTGCTTCAAGCAAAGACATCATCAATGTTGCATTCAAGCACTACAGAATCTGATGATTTACCTCCTGGCTTTAAAGGCAATCATTTTTCGAACCATCTAAGGAACGAACTCTCCCACTTATATCAGATTAAATGGAAAGCTCCTCCCCTGTTTGCTCTCAGTCAAAATTGGCTAGTTGTAGCTGGTGAAGAAAGTAGGGAGAAAATGGATCAAAAGCTAAGAGAAATGAAGGTGCTTGAAGCAGTATATCCGCGCCCGTCAGCTATTCCTCCAAGTCCATCGGTTTCTTTAGTTGTAGAGGAGGAAGACTATGATGATAACCTCACTCCTCTTATCCCTATCGTTCCCATTGAGGAAGAAGAGCCTATGGATATTAACCCTGAATTGCCAGCAACCATTGGCACCTCCCCCACTCTGCAGACACAAAGTTTGCACCAATCCATATCAGCAACAGATAGACCCTTATGTTCACAGCCTAGAACCTCATCCACTCTAGCCTCACCTGGTTCATCTGGTTTGCAAGCAGATTTTGCTGCAGCTTCTGCTGTTGTTGCTGCCATCATGAACAGTAATGAGCAAGGCAGCTCAGTTGACATGGATCTACTTGTTAGAATACTTAATGATCCATTACTGATTGAGAAGTTGAGAAGTGCTCATGATGGAGCTGCAGCGACCACTGTAAGTGCATCTGCAAATATAGTGGGTTTACCTAGTTCTGGGTTCAAGTGCGCTTCTCCATCAGTTTCATCATCTACACTTAGACCTGATAAGCCAACTTCTGGGGTTAATACCTCACGTATTGCGGGTTTATTTCCTGGTTCTGGCTTGATGCCAGCTACTTCTGTTCAATTGATGCATGCGCTAGATAAGCCCGCATCCCCGTCACTTCCATTTTCTAGGCCTATGCCAGGGAAACTAACAACTCCGTTAGCTCCATTGCCTGCACATGCAACTACTGTTGATATTCCCATGCCTGTGAACAGAACCACTGACCATTTGTCAAGTGGTGGTCTGTCTTCTGTAAGTACCCAACGTCCTCAACAAGATACTGTTAAGCTAGCAGCACCCATGGCATCCATTTCATCCAGGCAACCGAGCATAGTGCCATTACCTTCAACAGACGTGAGCATGCCTGCAGTAGTAAACCAGGTGCGATCCCCTACAACTACAATGGCTTACCGACCTAGTGTAGGCTCAGCATTTGCTGGGAAGGAAGCTCAGCCTGTGAAGGATCTCGCCTATTATAAGAGCCTTATTAGGCAACATGGTGCTGATGGTAATAATACTAGGCAAGAGACGCATGACTCCCAAATAGGTATCCATCAAACTAATTTCAAAGATTTGAAACCGGTTCATAACAATAAACCAGGAGACGTGAATTTCAAAATCCAGAAACCTTGCATATACTTCAAAAGTTCGAGGGGTTGTAGGAATGGTTCCAATTGCCCTTATCAACATGGCATATCAGCTCAATGGGGGTCTTGTAACATCCTAGGGTCCCAGATTGCAAAAAGAGCTAAATTAGAATCAGGAGTCAGGGGTAGAACATTAATTTAG 1674 0.4474 MKRARKSLRVSWAPGFNLCQVKLFLSEDSPSKVCQTSRDLLQAKTSSMLHSSTTESDDLPPGFKGNHFSNHLRNELSHLYQIKWKAPPLFALSQNWLVVAGEESREKMDQKLREMKVLEAVYPRPSAIPPSPSVSLVVEEEDYDDNLTPLIPIVPIEEEEPMDINPELPATIGTSPTLQTQSLHQSISATDRPLCSQPRTSSTLASPGSSGLQADFAAASAVVAAIMNSNEQGSSVDMDLLVRILNDPLLIEKLRSAHDGAAATTVSASANIVGLPSSGFKCASPSVSSSTLRPDKPTSGVNTSRIAGLFPGSGLMPATSVQLMHALDKPASPSLPFSRPMPGKLTTPLAPLPAHATTVDIPMPVNRTTDHLSSGGLSSVSTQRPQQDTVKLAAPMASISSRQPSIVPLPSTDVSMPAVVNQVRSPTTTMAYRPSVGSAFAGKEAQPVKDLAYYKSLIRQHGADGNNTRQETHDSQIGIHQTNFKDLKPVHNNKPGDVNFKIQKPCIYFKSSRGCRNGSNCPYQHGISAQWGSCNILGSQIAKRAKLESGVRGRTLI 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0109 557 MobiDBLite consensus disorder prediction 169 210 - -
Lele52g0109 557 ProSiteProfiles Zinc finger C3H1-type profile. 500 528 IPR000571 GO:0046872
Lele52g0109 557 MobiDBLite consensus disorder prediction 170 210 - -
Lele52g0109 557 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0109 Lele-ChrLele52 643875 647750 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele52g0109 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0093 49 568760 573041 Lele52g0109 52 643875 647750 hybridization
Lele50g0110 50 659764 663537 Lele52g0109 52 643875 647750 hybridization