Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0106 ATGGGACGGGTCATCCGTGCTCAGAGGAAGGGTGCTGGTTCAGTATTCAAGTCTCACACGCACCACCGCAAGGGTGCTGCGAGGTTCAGAAGCCTCGACTTCGGTGAGCGAAATGGATATCTGAAAGGTGTGGTCACCGATGTCATTCACGACCCTGGTCGTGGAGCTCCTCTCGCCAAGGTTACTTTCCGCCACCCCTTCAGGTATAAGAAGCAGACGGAGCTCTTTGTTGCGGCCGAGGGTATGTACACTGGCCAGTTCGTCTACTGCGGCAAGAAAGCCTCCCTTGTCGTTGGTAACGTGTTGCCCATCAGATCCATTCCCGAAGGAGCTGTAATTTGCAACGTCGAGCACCACGTCGGTGACCGTGGCGTATTTGCCAGGTGTTCCGGTGATTATGCCATCGTTATCAGCCACAACCCAGATAATGACACTTCTAGAATCAAGCTTCCATCTGGTGCAAAGAAGATTGTTCCAAGTGGCTGCCGTGCCATGATTGGCCAGGTCGCAGGTGGAGGGAGAACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCTTACCACAAGTTTAGGGTGAAGAGAAATTGCTGGCCTAAGGTGCGTGGTGTGGCAATGAATCCTGTGGAGCATCCTCATGGAGGAGGTAATCACCAACACATTGGTCATGCAAGTACTGTTAGGCGTGATGCTCCTCCTGGCCAGAAGGTGGGTCTCATTGCTGCCAAGAGAACCGGTCGTCTTAGGGGACAAGCTGCTGCAACTGCTGCCAAAGCTGATAAAAGTTCTTGA 786 0.5293 MGRVIRAQRKGAGSVFKSHTHHRKGAARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQTELFVAAEGMYTGQFVYCGKKASLVVGNVLPIRSIPEGAVICNVEHHVGDRGVFARCSGDYAIVISHNPDNDTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKSS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0106 261 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Lele52g0106 261 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Lele52g0106 261 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lele52g0106 261 FunFam 60S ribosomal protein L2 170 247 - -
Lele52g0106 261 Gene3D - 90 169 IPR014722 -
Lele52g0106 261 FunFam 60S ribosomal protein L2 1 86 - -
Lele52g0106 261 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele52g0106 261 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Lele52g0106 261 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Lele52g0106 261 MobiDBLite consensus disorder prediction 210 230 - -
Lele52g0106 261 PANTHER RIBOSOMAL PROTEIN L2 2 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele52g0106 261 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Lele52g0106 261 FunFam 60S ribosomal protein L8 90 169 - -
Lele52g0106 261 Gene3D - 1 86 IPR012340 -
Lele52g0106 261 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Lele52g0106 261 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Lele52g0106 261 MobiDBLite consensus disorder prediction 242 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0106 Lele-ChrLele52 631456 632946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0106 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.248 0.0 498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0090 49 551314 558722 Lele52g0106 52 631456 632946 hybridization
Lele50g0107 50 646810 648295 Lele52g0106 52 631456 632946 hybridization