Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0096 ATGGATCAGTGGAAACCTGAAGATTTGTCTAAATCTGCATCTATTGCGGCAGATTTAGTGCCCTCTTCTCTTCAGCCTCAGTCACAACTTGTTACAGTCACCTCTAACCGCTTGCAGAATTCGCATACCGAATCCAGGCAGAGGCCTGAAGCTGAAGCACAGGATCCAGTTGCTGCAAGAAAACTCCATAAGGCAGACCGCGAGAAACTGAGGAGGGATCGACTAAATGAGCATTTCCTAGAGCTTGGAAACACATTAGATCCAGTTAGGCCAAAGAATGACAAGGCTACTATCCTTTCAGACACAATTCAGGTTCTAAAAGATTTAACTGCTGAAGTCAATAGACTAAAAGCTGAGCATGCTGCACTTTCTGAAGAGTCACATGAACTAATGCAGGAGAAAAATGAACTCAGAGAAGAGAAGTCATCTCTGAAATCTGACATTGAAAATCTTAATGCACAGTATCAGCAGAGGGTTAGAGTCACGTTCCCATGGACTGCAATCGATCATTCAGTTGTCATGGCTCCACCATATTCATATCCCGTTCCTATACCCATTCCTCCCGCTCCAATTTCCCTTCATCCGTCAATTCAGCCTTTTCCTTTCTTTGGAAACCAAAATCCAGGTCCGATTTCCAATCCTTGTCCCACATATGTCCCCTTTTCTGCTCCAGCTAATCCCCTGGTCGAGCAGCCAACCGGCCAATATGCTTCAACGTCCAACACTTCAAGCAAACAAGACTCCGGAAGTAAGTCGCCAGATTATGAAAGGACCGGCAATGCTGAAAGATGTGGTGAGTCTAACGATGTAGCCACAGAGCTTGAACTTAAGATGCCTGGATCATCATTGCGGAAGGAATCGTCTACTGGAGCAAGGAAGGGCAAGCATTCATTAAGGAAGGAGAGAAATATCACAGATGGGAGTACTTCAAGCAGGCATTCTTCGTCTCAAGGACCTCAAGATAGCTCCAACAGCGTGGGTGACATCCCCAAGTCTGATAAATCATAA 1008 0.4534 MDQWKPEDLSKSASIAADLVPSSLQPQSQLVTVTSNRLQNSHTESRQRPEAEAQDPVAARKLHKADREKLRRDRLNEHFLELGNTLDPVRPKNDKATILSDTIQVLKDLTAEVNRLKAEHAALSEESHELMQEKNELREEKSSLKSDIENLNAQYQQRVRVTFPWTAIDHSVVMAPPYSYPVPIPIPPAPISLHPSIQPFPFFGNQNPGPISNPCPTYVPFSAPANPLVEQPTGQYASTSNTSSKQDSGSKSPDYERTGNAERCGESNDVATELELKMPGSSLRKESSTGARKGKHSLRKERNITDGSTSSRHSSSQGPQDSSNSVGDIPKSDKS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0096 335 SMART finulus 65 115 IPR011598 GO:0046983
Lele52g0096 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 109 IPR011598 GO:0046983
Lele52g0096 335 Coils Coil 99 154 - -
Lele52g0096 335 CDD bHLH_AtILR3_like 64 138 - -
Lele52g0096 335 MobiDBLite consensus disorder prediction 228 249 - -
Lele52g0096 335 PANTHER TRANSCRIPTION FACTOR BHLH121 25 332 IPR044579 GO:0003700|GO:0055072
Lele52g0096 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 130 IPR036638 GO:0046983
Lele52g0096 335 MobiDBLite consensus disorder prediction 223 335 - -
Lele52g0096 335 MobiDBLite consensus disorder prediction 288 307 - -
Lele52g0096 335 Gene3D - 57 138 IPR036638 GO:0046983
Lele52g0096 335 MobiDBLite consensus disorder prediction 308 329 - -
Lele52g0096 335 Pfam Helix-loop-helix DNA-binding domain 60 109 IPR011598 GO:0046983
Lele52g0096 335 MobiDBLite consensus disorder prediction 43 69 - -
Lele52g0096 335 MobiDBLite consensus disorder prediction 20 69 - -
Lele52g0096 335 MobiDBLite consensus disorder prediction 20 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0096 Lele-ChrLele52 576445 579585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0096 50 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 54.545 1.31e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele52g0096 HLH 5.8e-08 No_clan