Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0090 ATGGCGGAGGAGAGATCAACTGGTGTGGTTCAGTGGTTCAGCGATTTTAAAGGCTTTGGCTTTATCAAGCCCGATGAGGGAGGAGAAGATCTCTTTGTTCATCAATCTTCCATCAGATCCGAAGGATATCGTAGTCTTGTAGAAGGCGATCGCGTTGAGTTCGTGATTGCCTCCGGTGACAACGACAAAACCAAAGCCATCGATGTTACTGGCCCCAACGGGGCTCCTCTACAATCCAAGAAAGACAATTACGATGGTCGCGATGGGGGCTATGGCTTTAGCGGTGGATGGAGGGGTGGGGATAGGCGTAATAGCGGAGGAGCTAGCGGTGCTGGTTGTTATCAATGCGGTGATGTCGGCCATTTAGCCAGAGATTGCAACCGGGGCAATGATGCCGGTGGCCCTTCTTGTTTTAAATGTGGTGAAGTTGGGCATTTGGCTAGGGACTGTTCAATTGGAAATAATGGCGGCGGCGGGGCTTGCTTTAGGTGTCATGAGTATGGGCACATGGCGAGGGATTGCTCCAGGGGAAGCGGTGGGGGCGGTGGAGGTTGCTTCACATGTGGTGAAGTGGGTCACTTGGCCAGGGATTGCAACAAAGGAAGCGGAAGTCATGGCGGCGGAGGCGGCGGTGGCAGCACCAGAGGAAATGCATGCTTTAATTGTGGGAAGCGTGGGCATTTTGCGCGAGAGTGCCCTGAAGCCTCTGCATGA 714 0.5364 MAEERSTGVVQWFSDFKGFGFIKPDEGGEDLFVHQSSIRSEGYRSLVEGDRVEFVIASGDNDKTKAIDVTGPNGAPLQSKKDNYDGRDGGYGFSGGWRGGDRRNSGGASGAGCYQCGDVGHLARDCNRGNDAGGPSCFKCGEVGHLARDCSIGNNGGGGACFRCHEYGHMARDCSRGSGGGGGGCFTCGEVGHLARDCNKGSGSHGGGGGGGSTRGNACFNCGKRGHFARECPEASA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0090 237 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 SMART csp_8 7 72 IPR011129 GO:0003676
Lele52g0090 237 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Lele52g0090 237 SUPERFAMILY Retrovirus zinc finger-like domains 105 152 IPR036875 GO:0003676|GO:0008270
Lele52g0090 237 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Lele52g0090 237 PANTHER COLD SHOCK DOMAIN PROTEIN 2 178 234 - -
Lele52g0090 237 SUPERFAMILY Retrovirus zinc finger-like domains 201 234 IPR036875 GO:0003676|GO:0008270
Lele52g0090 237 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Lele52g0090 237 Gene3D - 1 83 IPR012340 -
Lele52g0090 237 ProSiteProfiles Zinc finger CCHC-type profile. 219 234 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 Gene3D - 131 156 - -
Lele52g0090 237 Gene3D - 210 237 - -
Lele52g0090 237 Gene3D - 157 180 - -
Lele52g0090 237 Gene3D - 181 206 - -
Lele52g0090 237 Gene3D - 96 130 - -
Lele52g0090 237 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Lele52g0090 237 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 Pfam Zinc knuckle 136 151 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 Pfam Zinc knuckle 218 234 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 Pfam Zinc knuckle 160 175 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 Pfam Zinc knuckle 184 199 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 ProSiteProfiles Zinc finger CCHC-type profile. 161 174 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Lele52g0090 237 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Lele52g0090 237 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Lele52g0090 237 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Lele52g0090 237 ProSiteProfiles Zinc finger CCHC-type profile. 185 198 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 SUPERFAMILY Retrovirus zinc finger-like domains 153 201 IPR036875 GO:0003676|GO:0008270
Lele52g0090 237 SMART c2hcfinal6 160 176 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 SMART c2hcfinal6 184 200 IPR001878 GO:0003676|GO:0008270
Lele52g0090 237 SMART c2hcfinal6 218 234 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0090 Lele-ChrLele52 552943 553656 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele52g0090 CSD 2.6e-23 CL0021