Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0083 ATGGTGCTCGAGGCGACAATGATCTGTATTGACAATTCCGAATGGATGCGAAACGGGGATTACTCACCTTCTCGATTTCAAGCTCAAGCAGATGCTGTCAATCTTATCTGCGGGGCTAAAACACAGTCTAATCCAGAAAATACAGTCGGAGTTCTCACGATGGCAGGGAAGGGAGTTCGGGTTTTGGTGACTCCCACCAGTGATCTGGGCAAGATCTTAGCTTGCATGCACGGACTAGAAATTGGTGGGGAAATGAACCTAGCCGCTGGTATTCAAGTAGCACAATTGGCTCTCAAGCATCGGCAAAATAAGAAACAACAGCAAAGAATTATCATTTTTGCTGGAAGTCCTGTCAATCACGAGAAGAAGATGCTGGAGATGATTGGAAGAAAACTAAAAAAGAACAGCGTTGCCCTTGACATTATCAATTTTGGTGAAGAAGATAAAGGCAAGACTGAAAAGCTGGAGGCACTTCTTGCAGCCGTTAATAATAATGATACAAGCCATATTGTCCATGTTCCTGCTGGTCCCAATGCTCTTTCTGATGTACTTATAAGTACACCTATTTTTACTGGAGATGGGGAAGGTGGAAGTGGTTTCGCTGCTGCAGCAGCTGCAGCTGCAGCTAGTGGTGTATCTGGTTTTGAGTTTGGTGTGGATCCAAACTTGGATCCGGAGCTAGCACTAGCTTTAAGAGTTTCAATGGAAGAGGAGAGGGCCAGACAGGAGGCAGCTGCAAAAAAGGCTGCTGAGGATGCTGCCAAACAGGAGAAAGGAGGTGATCAGCAAGCCAGTTCACAAGATGCAACAATGACTGAGCGAGCCAGTGCTGCAACATCTGAAGCTGATAACAAGACAAATGATATGATGGATGATGAGAATGCTCTCCTGCAGCAAGCACTTGCAATGTCAATGGATGATCCTGCCAGTAGCGATGACTTAAGGGATACGGATATGTCAGAAACAACTGCAGAAGATCCCGATTTGGCCCTTGCCCTTAAATTGTCGGTAACAGACAATACAAAGGACTCAGGAAGCCAGTCAGACATGAGTAAATTGTTGGCTGATCAGTCCTTCGTATCTTCTATCCTTGCTTCACTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATCTGCTGGCCTCCATGCAAAGTCAGTCTGAGCCCCAGCAGAAGAATGAAGATAAGCCGCCGAATGAGGAGGAAAAGAAATAG 1218 0.4598 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIIFAGSPVNHEKKMLEMIGRKLKKNSVALDIINFGEEDKGKTEKLEALLAAVNNNDTSHIVHVPAGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAASGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKAAEDAAKQEKGGDQQASSQDATMTERASAATSEADNKTNDMMDDENALLQQALAMSMDDPASSDDLRDTDMSETTAEDPDLALALKLSVTDNTKDSGSQSDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQSQSEPQQKNEDKPPNEEEKK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0083 405 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 397 - -
Lele52g0083 405 SMART uim 292 311 IPR003903 -
Lele52g0083 405 SMART uim 222 241 IPR003903 -
Lele52g0083 405 SMART uim 324 343 IPR003903 -
Lele52g0083 405 MobiDBLite consensus disorder prediction 259 284 - -
Lele52g0083 405 FunFam 26S proteasome non-ATPase regulatory subunit 4 3 186 - -
Lele52g0083 405 MobiDBLite consensus disorder prediction 306 327 - -
Lele52g0083 405 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 292 311 IPR003903 -
Lele52g0083 405 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Lele52g0083 405 Pfam Ubiquitin interaction motif 325 336 IPR003903 -
Lele52g0083 405 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Lele52g0083 405 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Lele52g0083 405 MobiDBLite consensus disorder prediction 365 405 - -
Lele52g0083 405 SUPERFAMILY vWA-like 4 175 IPR036465 -
Lele52g0083 405 MobiDBLite consensus disorder prediction 379 393 - -
Lele52g0083 405 FunFam 26S proteasome non-ATPase regulatory subunit 4 homolog 220 306 - -
Lele52g0083 405 Pfam von Willebrand factor type A domain 6 115 IPR002035 -
Lele52g0083 405 Gene3D - 220 306 - -
Lele52g0083 405 SMART VWA_4 2 175 IPR002035 -
Lele52g0083 405 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Lele52g0083 405 MobiDBLite consensus disorder prediction 242 258 - -
Lele52g0083 405 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Lele52g0083 405 MobiDBLite consensus disorder prediction 242 288 - -
Lele52g0083 405 Coils Coil 232 257 - -
Lele52g0083 405 CDD VWA_26S_proteasome_subunit 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0083 Lele-ChrLele52 517647 521899 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0083 52 517647 521899 Lele54g0545 54 11893061 11894809 CCT
Lele52g0083 52 517647 521899 Lele56g0889 56 7479772 7481399 CCT
Lele49g0073 49 448012 457822 Lele52g0083 52 517647 521899 hybridization
Lele50g0086 50 546705 553350 Lele52g0083 52 517647 521899 hybridization